Protein : Qrob_P0171250.2 Q. robur
Protein Identifier  ? Qrob_P0171250.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) K10899 - ATP-dependent DNA helicase Q1 [EC:3.6.4.12] Code Enzyme  EC:3.6.4.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 340  
Kegg Orthology  K10899
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0008026 ATP-dependent helicase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO:0006310 DNA recombination Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103336719 1 320 + 320 Gaps:1 45.18 706 83.39 0.0 mediator of RNA polymerase II transcription subunit 34
blastp_kegg lcl|vvi:100256266 1 320 + 320 none 45.01 711 83.12 0.0 ATP-dependent DNA helicase Q-like 2-like
blastp_kegg lcl|fve:101300545 13 320 + 308 Gaps:1 43.36 708 84.69 0.0 mediator of RNA polymerase II transcription subunit 34-like
blastp_kegg lcl|cam:101503147 13 319 + 307 Gaps:1 43.75 704 83.77 0.0 mediator of RNA polymerase II transcription subunit 34-like
blastp_kegg lcl|pxb:103935168 13 320 + 308 Gaps:1 43.55 705 83.71 0.0 mediator of RNA polymerase II transcription subunit 34
blastp_kegg lcl|pda:103718974 13 319 + 307 none 78.92 389 81.76 0.0 mediator of RNA polymerase II transcription subunit 34-like
blastp_kegg lcl|pvu:PHAVU_002G126800g 1 320 + 320 Gaps:1 45.44 702 80.25 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10001056mg 13 320 + 308 Gaps:3 66.45 468 82.32 0.0 hypothetical protein
blastp_kegg lcl|cit:102630216 13 320 + 308 Gaps:3 43.50 715 82.32 0.0 mediator of RNA polymerase II transcription subunit 34-like
blastp_kegg lcl|sly:101268017 1 320 + 320 none 45.20 708 78.75 0.0 mediator of RNA polymerase II transcription subunit 34-like
blastp_pdb 2wwy_B 61 321 + 261 Gaps:1 43.99 591 53.46 1e-91 mol:protein length:591 ATP-DEPENDENT DNA HELICASE Q1
blastp_pdb 2wwy_A 61 321 + 261 Gaps:1 43.99 591 53.46 1e-91 mol:protein length:591 ATP-DEPENDENT DNA HELICASE Q1
blastp_pdb 2v1x_B 61 321 + 261 Gaps:1 43.99 591 53.46 1e-91 mol:protein length:591 ATP-DEPENDENT DNA HELICASE Q1
blastp_pdb 2v1x_A 61 321 + 261 Gaps:1 43.99 591 53.46 1e-91 mol:protein length:591 ATP-DEPENDENT DNA HELICASE Q1
blastp_pdb 1oyy_A 64 317 + 254 Gaps:13 46.08 523 43.98 2e-58 mol:protein length:523 ATP-dependent DNA helicase
blastp_pdb 1oyw_A 64 317 + 254 Gaps:13 46.08 523 43.98 2e-58 mol:protein length:523 ATP-dependent DNA helicase
blastp_uniprot_sprot sp|Q9FT73|MED34_ARATH 14 320 + 307 Gaps:1 43.69 705 79.55 0.0 Mediator of RNA polymerase II transcription subunit 34 OS Arabidopsis thaliana GN MED34 PE 1 SV 1
blastp_uniprot_sprot sp|Q6AYJ1|RECQ1_RAT 14 321 + 308 Gaps:11 49.76 621 48.54 1e-93 ATP-dependent DNA helicase Q1 OS Rattus norvegicus GN Recql PE 2 SV 1
blastp_uniprot_sprot sp|P46063|RECQ1_HUMAN 14 321 + 308 Gaps:3 47.61 649 48.54 1e-91 ATP-dependent DNA helicase Q1 OS Homo sapiens GN RECQL PE 1 SV 3
blastp_uniprot_sprot sp|Q5RF63|RECQ1_PONAB 14 321 + 308 Gaps:3 47.61 649 48.54 3e-91 ATP-dependent DNA helicase Q1 OS Pongo abelii GN RECQL PE 2 SV 1
blastp_uniprot_sprot sp|Q9Z129|RECQ1_MOUSE 14 321 + 308 Gaps:7 47.69 648 47.57 5e-91 ATP-dependent DNA helicase Q1 OS Mus musculus GN Recql PE 1 SV 2
blastp_uniprot_sprot sp|Q9TXJ8|RECQ1_CAEEL 7 320 + 314 Gaps:3 49.92 631 43.49 6e-80 Putative ATP-dependent DNA helicase Q1 OS Caenorhabditis elegans GN K02F3.12 PE 3 SV 3
blastp_uniprot_sprot sp|A8WK63|RECQ1_CAEBR 7 320 + 314 Gaps:3 50.97 618 43.49 1e-79 Putative ATP-dependent DNA helicase Q1 OS Caenorhabditis briggsae GN CBG24191 PE 3 SV 1
blastp_uniprot_sprot sp|Q8L840|RQL4A_ARATH 46 319 + 274 Gaps:5 22.81 1188 47.60 2e-75 ATP-dependent DNA helicase Q-like 4A OS Arabidopsis thaliana GN RECQL4A PE 2 SV 1
blastp_uniprot_sprot sp|Q9FT70|RQL4B_ARATH 46 332 + 287 Gaps:5 24.70 1150 45.77 2e-73 ATP-dependent DNA helicase Q-like 4B OS Arabidopsis thaliana GN RECQL4B PE 2 SV 1
blastp_uniprot_sprot sp|Q9VGI8|BLM_DROME 75 319 + 245 Gaps:3 16.27 1487 50.83 2e-71 Bloom syndrome protein homolog OS Drosophila melanogaster GN Blm PE 1 SV 1
rpsblast_cdd gnl|CDD|129701 73 319 + 247 Gaps:9 50.64 470 53.36 5e-87 TIGR00614 recQ_fam ATP-dependent DNA helicase RecQ family. All proteins in this family for which functions are known are 3'-5' DNA-DNA helicases. These proteins are used for recombination recombinational repair and possibly maintenance of chromosome stability. This family is based on the phylogenomic analysis of JA Eisen (1999 Ph.D. Thesis Stanford University).
rpsblast_cdd gnl|CDD|178682 46 319 + 274 Gaps:5 22.68 1195 47.60 3e-76 PLN03137 PLN03137 ATP-dependent DNA helicase Q4-like Provisional.
rpsblast_cdd gnl|CDD|130456 74 319 + 246 Gaps:13 39.42 591 45.92 3e-72 TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions as well as more distantly related bacterial helicases related to RecQ.
rpsblast_cdd gnl|CDD|30860 73 320 + 248 Gaps:11 40.17 590 47.26 4e-72 COG0514 RecQ Superfamily II DNA helicase [DNA replication recombination and repair].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
TIGRFAM 73 320 248 TIGR00614 none recQ_fam: ATP-dependent DNA helicase, RecQ family IPR004589
SUPERFAMILY 269 320 52 SSF52540 none none IPR027417
PANTHER 61 319 259 PTHR13710 none none none
SMART 76 279 204 SM00487 none DEAD-like helicases superfamily IPR014001
Gene3D 268 319 52 G3DSA:3.40.50.300 none none IPR027417
ProSiteProfiles 88 263 176 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
SUPERFAMILY 60 263 204 SSF52540 none none IPR027417
PANTHER 61 319 259 PTHR13710:SF70 none none none
Gene3D 67 266 200 G3DSA:3.40.50.300 none none IPR027417
Pfam 83 250 168 PF00270 none DEAD/DEAH box helicase IPR011545

0 Localization

0 Qtllist

0 Targeting