Protein : Qrob_P0169840.2 Q. robur
Protein Identifier  ? Qrob_P0169840.2 Organism . Name  Quercus robur
Score  87.1 Score Type  egn
Protein Description  (M=1) K12272 - signal recognition particle receptor subunit beta Gene Prediction Quality  validated
Protein length 

Sequence

Length: 281  
Kegg Orthology  K12272
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005525 GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO:0007264 small GTPase mediated signal transduction Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.

45 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa009762mg 1 280 + 280 Gaps:3 100.00 279 76.70 2e-158 hypothetical protein
blastp_kegg lcl|pmum:103336860 1 280 + 280 Gaps:3 100.00 279 76.34 3e-158 signal recognition particle receptor subunit beta-like
blastp_kegg lcl|tcc:TCM_016611 11 279 + 269 none 98.53 273 82.90 1e-157 Signal recognition particle receptor subunit beta isoform 1
blastp_kegg lcl|rcu:RCOM_0529240 25 279 + 255 none 98.46 259 83.53 8e-150 Signal recognition particle receptor subunit beta putative
blastp_kegg lcl|pop:POPTR_0002s02250g 25 279 + 255 none 98.84 258 80.39 1e-147 POPTRDRAFT_642947 hypothetical protein
blastp_kegg lcl|vvi:100265371 23 279 + 257 none 99.23 259 77.43 4e-147 signal recognition particle receptor subunit beta-like
blastp_kegg lcl|pxb:103946772 18 280 + 263 none 98.87 266 76.81 3e-146 signal recognition particle receptor subunit beta-like
blastp_kegg lcl|cic:CICLE_v10032463mg 21 279 + 259 Gaps:2 99.24 263 79.31 6e-146 hypothetical protein
blastp_kegg lcl|cit:102626619 21 279 + 259 Gaps:2 99.24 263 79.31 6e-146 signal recognition particle receptor subunit beta-like
blastp_kegg lcl|gmx:100815500 24 279 + 256 none 98.84 259 75.39 8e-146 signal recognition particle receptor subunit beta-like
blastp_pdb 2go5_2 70 265 + 196 Gaps:10 90.65 214 32.47 5e-24 mol:protein length:214 Signal recognition particle receptor beta sub
blastp_pdb 2fh5_B 70 265 + 196 Gaps:10 90.65 214 32.47 5e-24 mol:protein length:214 Signal recognition particle receptor beta sub
blastp_pdb 1nrj_B 78 261 + 184 Gaps:26 86.24 218 32.98 9e-11 mol:protein length:218 Signal recognition particle receptor beta sub
blastp_pdb 2ged_B 78 225 + 148 Gaps:15 74.09 193 35.66 6e-10 mol:protein length:193 Signal recognition particle receptor beta sub
blastp_pdb 2ged_A 78 225 + 148 Gaps:15 74.09 193 35.66 6e-10 mol:protein length:193 Signal recognition particle receptor beta sub
blastp_pdb 2gao_B 67 212 + 146 Gaps:14 63.46 208 32.58 1e-07 mol:protein length:208 GTP-binding protein SAR1a
blastp_pdb 2gao_A 67 212 + 146 Gaps:14 63.46 208 32.58 1e-07 mol:protein length:208 GTP-binding protein SAR1a
blastp_pdb 1f6b_B 67 213 + 147 Gaps:14 67.17 198 31.58 2e-07 mol:protein length:198 SAR1
blastp_pdb 1f6b_A 67 213 + 147 Gaps:14 67.17 198 31.58 2e-07 mol:protein length:198 SAR1
blastp_pdb 2fmx_B 67 212 + 146 Gaps:14 67.69 195 31.82 2e-07 mol:protein length:195 GTP-binding protein SAR1b
blastp_uniprot_sprot sp|Q54XX1|SRPRB_DICDI 79 262 + 184 Gaps:11 62.41 290 35.91 8e-28 Signal recognition particle receptor subunit beta OS Dictyostelium discoideum GN srprb PE 3 SV 1
blastp_uniprot_sprot sp|P47758|SRPRB_MOUSE 72 265 + 194 Gaps:10 71.38 269 32.81 3e-23 Signal recognition particle receptor subunit beta OS Mus musculus GN Srprb PE 1 SV 1
blastp_uniprot_sprot sp|Q4FZX7|SRPRB_RAT 72 265 + 194 Gaps:10 71.38 269 32.29 7e-23 Signal recognition particle receptor subunit beta OS Rattus norvegicus GN Srprb PE 2 SV 1
blastp_uniprot_sprot sp|Q9Y5M8|SRPRB_HUMAN 64 265 + 202 Gaps:11 73.43 271 34.17 3e-22 Signal recognition particle receptor subunit beta OS Homo sapiens GN SRPRB PE 1 SV 3
blastp_uniprot_sprot sp|P36057|SRPB_YEAST 78 261 + 184 Gaps:26 77.05 244 32.98 8e-10 Signal recognition particle receptor subunit beta OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN SRP102 PE 1 SV 1
blastp_uniprot_sprot sp|Q52NJ3|SAR1A_PIG 67 212 + 146 Gaps:14 66.67 198 32.58 4e-08 GTP-binding protein SAR1a OS Sus scrofa GN SAR1A PE 2 SV 1
blastp_uniprot_sprot sp|Q3T0D7|SAR1A_BOVIN 67 212 + 146 Gaps:14 66.67 198 32.58 4e-08 GTP-binding protein SAR1a OS Bos taurus GN SAR1A PE 2 SV 1
blastp_uniprot_sprot sp|Q9CQC9|SAR1B_MOUSE 67 213 + 147 Gaps:14 67.17 198 32.33 2e-07 GTP-binding protein SAR1b OS Mus musculus GN Sar1b PE 1 SV 1
blastp_uniprot_sprot sp|Q5R548|SAR1A_PONAB 67 212 + 146 Gaps:14 66.67 198 33.33 2e-07 GTP-binding protein SAR1a OS Pongo abelii GN SAR1A PE 2 SV 1
blastp_uniprot_sprot sp|Q9NR31|SAR1A_HUMAN 67 212 + 146 Gaps:14 66.67 198 33.33 2e-07 GTP-binding protein SAR1a OS Homo sapiens GN SAR1A PE 1 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 54 279 226 PTHR19326 none none none
Phobius 72 280 209 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 67 276 210 G3DSA:3.40.50.300 none none IPR027417
Coils 211 232 22 Coil none none none
Pfam 75 255 181 PF09439 none Signal recognition particle receptor beta subunit IPR019009
SUPERFAMILY 79 266 188 SSF52540 none none IPR027417
ProSiteProfiles 70 278 209 PS51417 none small GTPase Arf family profile. IPR024156
Coils 4 32 29 Coil none none none
Phobius 1 50 50 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 51 71 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

1 Localization

Analysis Start End Length
TMHMM 49 71 22

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5

0 Targeting