2 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0006351 | transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. |
| GO:0003714 | transcription corepressor activity | Interacting selectively and non-covalently with a repressing transcription factor and also with the basal transcription machinery in order to stop, prevent, or reduce the frequency, rate or extent of transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between repressive transcription factors and the basal transcription machinery. |
14 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|rcu:RCOM_1516720 | 9 | 192 | + | 184 | none | 24.18 | 761 | 67.93 | 3e-80 | signal transducer putative |
| blastp_kegg | lcl|vvi:100265400 | 12 | 192 | + | 181 | Gaps:1 | 28.53 | 638 | 71.43 | 6e-74 | protein SCAI homolog |
| blastp_kegg | lcl|mdm:103408116 | 8 | 191 | + | 184 | Gaps:1 | 30.20 | 606 | 67.76 | 1e-73 | protein SCAI |
| blastp_kegg | lcl|tcc:TCM_025691 | 9 | 189 | + | 181 | none | 28.87 | 627 | 65.19 | 1e-72 | Uncharacterized protein isoform 1 |
| blastp_kegg | lcl|pxb:103962802 | 8 | 191 | + | 184 | Gaps:1 | 30.55 | 599 | 66.12 | 6e-72 | protein SCAI-like |
| blastp_kegg | lcl|pxb:103962784 | 8 | 191 | + | 184 | Gaps:1 | 30.55 | 599 | 66.12 | 6e-72 | protein SCAI-like |
| blastp_kegg | lcl|fve:101313853 | 8 | 186 | + | 179 | none | 23.43 | 764 | 64.80 | 2e-70 | protein SCAI-like |
| blastp_kegg | lcl|pxb:103935179 | 8 | 191 | + | 184 | Gaps:1 | 30.55 | 599 | 65.57 | 2e-67 | protein SCAI-like |
| blastp_kegg | lcl|gmx:100810202 | 9 | 181 | + | 173 | Gaps:3 | 29.11 | 584 | 66.47 | 3e-66 | protein SCAI-like |
| blastp_kegg | lcl|pop:POPTR_0093s002302 | 14 | 192 | + | 179 | Gaps:2 | 99.44 | 178 | 65.54 | 1e-65 | hypothetical protein |
| blastp_uniprot_sprot | sp|Q8N9R8|SCAI_HUMAN | 16 | 171 | + | 156 | Gaps:6 | 24.75 | 606 | 33.33 | 1e-13 | Protein SCAI OS Homo sapiens GN SCAI PE 1 SV 2 |
| blastp_uniprot_sprot | sp|Q8C8N2|SCAI_MOUSE | 16 | 171 | + | 156 | Gaps:6 | 24.75 | 606 | 33.33 | 2e-13 | Protein SCAI OS Mus musculus GN Scai PE 1 SV 2 |
| blastp_uniprot_sprot | sp|Q54YY1|SCAI_DICDI | 16 | 148 | + | 133 | Gaps:6 | 16.43 | 773 | 35.43 | 7e-09 | Protein SCAI homolog OS Dictyostelium discoideum GN scai PE 3 SV 1 |
| rpsblast_cdd | gnl|CDD|152505 | 11 | 130 | + | 120 | Gaps:4 | 22.66 | 512 | 47.41 | 1e-31 | pfam12070 DUF3550 Protein of unknown function (DUF3550/UPF0682). This family of proteins is functionally uncharacterized. This protein is found in eukaryotes. Proteins in this family are typically between 249 to 606 amino acids in length. |
10 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| PANTHER | 10 | 179 | 170 | PTHR21243:SF13 | none | none | none |
| Phobius | 101 | 111 | 11 | CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | none |
| Phobius | 83 | 100 | 18 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
| PANTHER | 10 | 179 | 170 | PTHR21243 | none | none | none |
| Pfam | 11 | 130 | 120 | PF12070 | none | Protein of unknown function (DUF3550/UPF0682) | IPR022709 |
| Phobius | 44 | 63 | 20 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
| Phobius | 112 | 130 | 19 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
| Phobius | 131 | 192 | 62 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
| Phobius | 64 | 82 | 19 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
| Phobius | 1 | 43 | 43 | CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | none |
5 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran_2000_2002_QTL6_Delta.F | Qrob_Chr03 | 3 | s_2HYXJ2_207 | s_1AUAXK_317 | 29.12 | 6,3 | 45,37 | lod | 3.1666 | 0.026 |
| Bourran2_2014_nLBD_3P | Qrob_Chr03 | 3 | s_1ET7H8_604 | s_1BYNB5_834 | 23,73 | 0 | 46,72 | lod | 1,7573 | 3,8 |
| PM_1999_QTL14_peak_Bud_burst_3P | Qrob_Chr03 | 3 | s_2F0SI1_756 | v_6056_735 | 11,78 | 3,78 | 50,78 | lod | 2,5 | 4,5 |
| Bourran2_2014_nFork*_3P | Qrob_Chr06 | 6 | v_12930_125 | s_1AMZEI_909 | 34,28 | 7,43 | 41,48 | lod | 2,4044 | 5,5 |
| Bourran2_2014_rEpiBC*_3P | Qrob_Chr03 | 3 | s_1A3B3X_1163 | s_1DKGMO_450 | 23,04 | 4,92 | 41,12 | lod | 2,5668 | 7 |
