Protein : Qrob_P0169310.2 Q. robur
Protein Identifier  ? Qrob_P0169310.2 Organism . Name  Quercus robur
Score  86.1 Score Type  egn
Protein Description  (M=4) PF12070 - Protein of unknown function (DUF3550/UPF0682) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 259  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003714 transcription corepressor activity Interacting selectively and non-covalently with a repressing transcription factor and also with the basal transcription machinery in order to stop, prevent, or reduce the frequency, rate or extent of transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between repressive transcription factors and the basal transcription machinery.

14 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10030972mg 14 257 + 244 Gaps:14 37.42 620 74.57 2e-111 hypothetical protein
blastp_kegg lcl|pop:POPTR_0093s002301 14 255 + 242 Gaps:9 71.69 325 73.39 4e-111 hypothetical protein
blastp_kegg lcl|cit:102615830 14 257 + 244 Gaps:14 37.42 620 74.57 9e-111 protein SCAI-like
blastp_kegg lcl|pper:PRUPE_ppa003151mg 13 257 + 245 Gaps:29 36.45 598 79.82 2e-109 hypothetical protein
blastp_kegg lcl|tcc:TCM_025691 13 257 + 245 Gaps:2 39.07 627 69.39 6e-109 Uncharacterized protein isoform 1
blastp_kegg lcl|pmum:103331277 13 257 + 245 Gaps:29 36.45 598 79.36 9e-109 protein SCAI
blastp_kegg lcl|pop:POPTR_0013s07040g 14 257 + 244 Gaps:9 37.96 619 73.19 3e-108 POPTRDRAFT_773891 hypothetical protein
blastp_kegg lcl|pxb:103962802 13 257 + 245 Gaps:28 36.56 599 77.17 2e-107 protein SCAI-like
blastp_kegg lcl|pxb:103962784 13 257 + 245 Gaps:28 36.56 599 77.17 2e-107 protein SCAI-like
blastp_kegg lcl|mdm:103408116 14 257 + 244 Gaps:21 37.13 606 76.00 2e-107 protein SCAI
blastp_uniprot_sprot sp|Q8N9R8|SCAI_HUMAN 14 207 + 194 Gaps:14 30.03 606 34.62 3e-17 Protein SCAI OS Homo sapiens GN SCAI PE 1 SV 2
blastp_uniprot_sprot sp|Q8C8N2|SCAI_MOUSE 14 207 + 194 Gaps:14 30.03 606 34.62 8e-17 Protein SCAI OS Mus musculus GN Scai PE 1 SV 2
blastp_uniprot_sprot sp|Q54YY1|SCAI_DICDI 14 179 + 166 Gaps:64 29.24 773 26.11 2e-07 Protein SCAI homolog OS Dictyostelium discoideum GN scai PE 3 SV 1
rpsblast_cdd gnl|CDD|152505 13 180 + 168 Gaps:3 33.01 512 45.56 1e-53 pfam12070 DUF3550 Protein of unknown function (DUF3550/UPF0682). This family of proteins is functionally uncharacterized. This protein is found in eukaryotes. Proteins in this family are typically between 249 to 606 amino acids in length.

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 9 180 172 PTHR21243:SF13 none none none
PANTHER 9 180 172 PTHR21243 none none none
Pfam 13 184 172 PF12070 none Protein of unknown function (DUF3550/UPF0682) IPR022709

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting