Protein : Qrob_P0169300.2 Q. robur
Protein Identifier  ? Qrob_P0169300.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=4) PF12070 - Protein of unknown function (DUF3550/UPF0682) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 191  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003714 transcription corepressor activity Interacting selectively and non-covalently with a repressing transcription factor and also with the basal transcription machinery in order to stop, prevent, or reduce the frequency, rate or extent of transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between repressive transcription factors and the basal transcription machinery.

14 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101225638 13 188 + 176 Gaps:4 28.71 599 89.53 2e-105 protein SCAI-like
blastp_kegg lcl|csv:101206987 13 188 + 176 Gaps:4 28.71 599 89.53 2e-105 protein SCAI-like
blastp_kegg lcl|vvi:100265400 29 188 + 160 none 25.08 638 94.38 6e-105 protein SCAI homolog
blastp_kegg lcl|cmo:103496910 21 188 + 168 Gaps:1 28.21 599 89.94 7e-105 protein SCAI
blastp_kegg lcl|tcc:TCM_025691 29 188 + 160 none 25.52 627 94.38 1e-104 Uncharacterized protein isoform 1
blastp_kegg lcl|rcu:RCOM_1516720 22 188 + 167 none 21.94 761 88.02 2e-102 signal transducer putative
blastp_kegg lcl|gmx:100810202 29 188 + 160 none 27.40 584 90.00 6e-102 protein SCAI-like
blastp_kegg lcl|pop:POPTR_0013s07040g 16 188 + 173 Gaps:6 26.98 619 89.22 1e-101 POPTRDRAFT_773891 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10030972mg 16 188 + 173 Gaps:1 27.74 620 86.63 1e-100 hypothetical protein
blastp_kegg lcl|gmx:100801761 30 188 + 159 none 27.37 581 89.31 1e-100 protein SCAI-like
blastp_uniprot_sprot sp|Q8C8N2|SCAI_MOUSE 19 187 + 169 Gaps:7 29.04 606 43.75 9e-39 Protein SCAI OS Mus musculus GN Scai PE 1 SV 2
blastp_uniprot_sprot sp|Q8N9R8|SCAI_HUMAN 21 187 + 167 Gaps:7 28.71 606 43.68 2e-38 Protein SCAI OS Homo sapiens GN SCAI PE 1 SV 2
blastp_uniprot_sprot sp|Q54YY1|SCAI_DICDI 28 188 + 161 Gaps:7 21.47 773 44.58 1e-36 Protein SCAI homolog OS Dictyostelium discoideum GN scai PE 3 SV 1
rpsblast_cdd gnl|CDD|152505 36 188 + 153 Gaps:3 30.47 512 50.64 1e-54 pfam12070 DUF3550 Protein of unknown function (DUF3550/UPF0682). This family of proteins is functionally uncharacterized. This protein is found in eukaryotes. Proteins in this family are typically between 249 to 606 amino acids in length.

2 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 36 188 153 PF12070 none Protein of unknown function (DUF3550/UPF0682) IPR022709
PANTHER 7 185 179 PTHR21243 none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting