Protein : Qrob_P0167770.2 Q. robur
Protein Identifier  ? Qrob_P0167770.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR19957:SF91 - SYNTAXIN-RELATED PROTEIN KNOLLE (PTHR19957:SF91) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 311  
Kegg Orthology  K08486
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0016192 vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO:0005484 SNAP receptor activity Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa023624mg 1 310 + 310 Gaps:6 100.00 316 82.91 0.0 hypothetical protein
blastp_kegg lcl|pmum:103338959 1 310 + 310 Gaps:6 100.00 316 82.91 0.0 syntaxin-related protein KNOLLE
blastp_kegg lcl|mdm:103432115 1 310 + 310 Gaps:7 100.00 317 78.55 5e-171 syntaxin-related protein KNOLLE-like
blastp_kegg lcl|fve:101304801 1 310 + 310 Gaps:3 100.00 307 81.11 6e-171 syntaxin-related protein KNOLLE-like
blastp_kegg lcl|pxb:103956191 1 310 + 310 Gaps:7 100.00 317 78.55 8e-171 syntaxin-related protein KNOLLE
blastp_kegg lcl|mdm:103449285 1 310 + 310 Gaps:7 100.00 317 78.23 5e-170 syntaxin-related protein KNOLLE
blastp_kegg lcl|gmx:100816016 1 310 + 310 Gaps:12 100.00 322 77.02 9e-170 syntaxin-related protein KNOLLE-like
blastp_kegg lcl|pvu:PHAVU_004G077900g 1 310 + 310 Gaps:7 100.00 317 77.29 3e-169 hypothetical protein
blastp_kegg lcl|cmo:103485972 1 310 + 310 Gaps:1 100.00 309 79.94 9e-166 syntaxin-related protein KNOLLE
blastp_kegg lcl|pop:POPTR_0013s05010g 1 310 + 310 Gaps:7 100.00 313 79.23 2e-164 POPTRDRAFT_571159 Syntaxin-related protein KNOLLE
blastp_pdb 2xhe_B 60 282 + 223 Gaps:24 81.36 279 31.28 2e-18 mol:protein length:279 SYNTAXIN1
blastp_pdb 3ipd_F 214 306 + 93 Gaps:6 79.82 109 40.23 3e-13 mol:protein length:109 Syntaxin-1A
blastp_pdb 3ipd_B 214 306 + 93 Gaps:6 79.82 109 40.23 3e-13 mol:protein length:109 Syntaxin-1A
blastp_pdb 3hd7_F 214 306 + 93 Gaps:6 79.82 109 40.23 3e-13 mol:protein length:109 Syntaxin-1A
blastp_pdb 3hd7_B 214 306 + 93 Gaps:6 79.82 109 40.23 3e-13 mol:protein length:109 Syntaxin-1A
blastp_pdb 3c98_B 97 283 + 187 Gaps:13 65.23 279 29.67 4e-13 mol:protein length:279 Syntaxin-1A
blastp_pdb 1jth_D 214 283 + 70 none 90.91 77 44.29 9e-12 mol:protein length:77 syntaxin 1a
blastp_pdb 1jth_B 214 283 + 70 none 90.91 77 44.29 9e-12 mol:protein length:77 syntaxin 1a
blastp_pdb 1hvv_D 214 283 + 70 none 93.33 75 44.29 1e-11 mol:protein length:75 SYNTAXIN 1A
blastp_pdb 1hvv_C 214 283 + 70 none 93.33 75 44.29 1e-11 mol:protein length:75 SYNTAXIN 1A
blastp_uniprot_sprot sp|Q42374|SY111_ARATH 1 310 + 310 Gaps:12 100.00 310 69.03 2e-137 Syntaxin-related protein KNOLLE OS Arabidopsis thaliana GN KN PE 1 SV 1
blastp_uniprot_sprot sp|O64791|SY124_ARATH 1 302 + 302 Gaps:11 96.70 303 50.17 4e-98 Syntaxin-124 OS Arabidopsis thaliana GN SYP124 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SXB0|SY125_ARATH 1 288 + 288 Gaps:16 91.95 298 51.46 1e-88 Syntaxin-125 OS Arabidopsis thaliana GN SYP125 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZQZ8|SY123_ARATH 1 304 + 304 Gaps:8 97.70 305 47.99 3e-86 Syntaxin-123 OS Arabidopsis thaliana GN SYP123 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZSD4|SY121_ARATH 1 286 + 286 Gaps:2 83.24 346 48.96 3e-86 Syntaxin-121 OS Arabidopsis thaliana GN SYP121 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SVC2|SY122_ARATH 1 288 + 288 Gaps:1 84.75 341 43.94 4e-77 Syntaxin-122 OS Arabidopsis thaliana GN SYP122 PE 1 SV 1
blastp_uniprot_sprot sp|Q9ZPV9|SY112_ARATH 1 306 + 306 Gaps:24 99.67 305 41.45 4e-68 Syntaxin-112 OS Arabidopsis thaliana GN SYP112 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SRV7|SY131_ARATH 1 308 + 308 Gaps:13 98.37 306 40.86 1e-65 Putative syntaxin-131 OS Arabidopsis thaliana GN SYP131 PE 3 SV 1
blastp_uniprot_sprot sp|Q8VZU2|SY132_ARATH 1 286 + 286 Gaps:12 91.45 304 42.09 2e-59 Syntaxin-132 OS Arabidopsis thaliana GN SYP132 PE 1 SV 1
blastp_uniprot_sprot sp|Q24547|STX1A_DROME 56 307 + 252 Gaps:19 86.25 291 27.89 3e-20 Syntaxin-1A OS Drosophila melanogaster GN Syx1A PE 1 SV 1

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 284 308 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 41 267 227 SSF47661 none none IPR010989
Phobius 1 283 283 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSitePatterns 218 258 41 PS00914 "Reactome:REACT_11184" Syntaxin / epimorphin family signature. IPR006012
Pfam 46 149 104 PF00804 "Reactome:REACT_11184" Syntaxin IPR006011
SMART 38 164 127 SM00503 "Reactome:REACT_11184" Syntaxin N-terminal domain IPR006011
PANTHER 11 309 299 PTHR19957:SF91 none none none
ProSiteProfiles 212 274 63 PS50192 none t-SNARE coiled-coil homology domain profile. IPR000727
Coils 50 78 29 Coil none none none
Gene3D 210 306 97 G3DSA:1.20.5.110 none none none
Phobius 309 310 2 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 43 170 128 G3DSA:1.20.58.70 none none none
Pfam 217 279 63 PF05739 none SNARE domain IPR000727
SMART 207 274 68 SM00397 none Helical region found in SNAREs IPR000727
PANTHER 11 309 299 PTHR19957 none none none
Coils 104 125 22 Coil none none none

1 Localization

Analysis Start End Length
TMHMM 286 308 22

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8
Bourran2_2014_nPriLBD*_A4 Qrob_Chr07 7 s_1C6BY7_802 s_1BPEBU_1211 7,15 0 16,34 lod 3,9419 10,2

0 Targeting