Protein : Qrob_P0166150.2 Q. robur
Protein Identifier  ? Qrob_P0166150.2 Organism . Name  Quercus robur
Score  9.1 Score Type  egn
Protein Description  (M=1) PF01844 - HNH endonuclease Gene Prediction Quality  validated
Protein length 

Sequence

Length: 643  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0004519 endonuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.

14 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100267344 28 637 + 610 Gaps:73 52.73 1280 59.56 0.0 zinc finger Ran-binding domain-containing protein 3-like
blastp_kegg lcl|cit:102611082 27 641 + 615 Gaps:34 52.23 1212 60.19 0.0 DNA annealing helicase and endonuclease ZRANB3-like
blastp_kegg lcl|rcu:RCOM_1470570 29 639 + 611 Gaps:45 50.61 1229 60.29 0.0 ATP binding protein putative (EC:2.7.11.1)
blastp_kegg lcl|tcc:TCM_014152 29 629 + 601 Gaps:41 50.45 1217 60.10 0.0 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein putative isoform 1
blastp_kegg lcl|pxb:103930986 28 637 + 610 Gaps:55 50.53 1221 58.51 0.0 DNA annealing helicase and endonuclease ZRANB3
blastp_kegg lcl|pop:POPTR_0012s06860g 29 629 + 601 Gaps:55 82.92 726 61.30 0.0 POPTRDRAFT_569943 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10018579mg 27 641 + 615 Gaps:82 49.96 1155 61.87 0.0 hypothetical protein
blastp_kegg lcl|fve:101303335 28 638 + 611 Gaps:53 52.80 1231 57.08 0.0 uncharacterized protein LOC101303335
blastp_kegg lcl|mdm:103455394 28 637 + 610 Gaps:53 50.53 1221 57.70 0.0 DNA annealing helicase and endonuclease ZRANB3
blastp_kegg lcl|gmx:100788690 28 624 + 597 Gaps:59 51.49 1177 58.42 0.0 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1-like
blastp_uniprot_sprot sp|Q6NZP1|ZRAB3_MOUSE 408 570 + 163 Gaps:10 15.25 1069 38.65 2e-28 DNA annealing helicase and endonuclease ZRANB3 OS Mus musculus GN Zranb3 PE 1 SV 1
blastp_uniprot_sprot sp|E1BB03|ZRAB3_BOVIN 321 573 + 253 Gaps:45 26.26 1074 30.50 5e-28 DNA annealing helicase and endonuclease ZRANB3 OS Bos taurus GN ZRANB3 PE 3 SV 3
blastp_uniprot_sprot sp|Q5FWF4|ZRAB3_HUMAN 163 573 + 411 Gaps:61 39.11 1079 27.96 2e-27 DNA annealing helicase and endonuclease ZRANB3 OS Homo sapiens GN ZRANB3 PE 1 SV 2
rpsblast_kog gnl|CDD|36218 28 92 + 65 Gaps:22 12.63 689 25.29 6e-14 KOG1000 KOG1000 KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box superfamily [Chromatin structure and dynamics].

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 29 106 78 PTHR10799 none none none
SUPERFAMILY 29 103 75 SSF52540 none none IPR027417
PANTHER 29 106 78 PTHR10799:SF539 none none none
Pfam 525 559 35 PF01844 none HNH endonuclease IPR002711

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting