Protein : Qrob_P0165780.2 Q. robur
Protein Identifier  ? Qrob_P0165780.2 Organism . Name  Quercus robur
Score  99.2 Score Type  egn
Protein Description  (M=7) KOG1052//KOG1053//KOG1054//KOG1056//KOG4440 - Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms]. // Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms]. // Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms]. // Glutamate-gated metabotropic ion channel receptor subunit GRM2 and related subunits G-protein coupled receptor superfamily [Inorganic ion transport and metabolism Signal transduction mechanisms]. // NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 880  
Kegg Orthology  K05387
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0004970 ionotropic glutamate receptor activity Catalysis of the transmembrane transfer of an ion by a channel that opens when glutamate has been bound by the channel complex or one of its constituent parts.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_036849 1 834 + 834 Gaps:3 84.40 987 63.99 0.0 Glutamate receptor 2.9
blastp_kegg lcl|rcu:RCOM_0919920 1 846 + 846 Gaps:24 88.72 931 65.25 0.0 glutamate receptor 2 plant putative
blastp_kegg lcl|rcu:RCOM_0919910 2 846 + 845 Gaps:24 85.85 961 65.33 0.0 glutamate receptor 2 plant putative
blastp_kegg lcl|cic:CICLE_v10010598mg 1 839 + 839 Gaps:17 86.10 957 62.74 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0919660 1 872 + 872 Gaps:21 88.05 971 62.22 0.0 glutamate receptor 2 plant putative
blastp_kegg lcl|pop:POPTR_0018s03170g 1 785 + 785 Gaps:6 87.32 899 65.22 0.0 POPTRDRAFT_261541 hypothetical protein
blastp_kegg lcl|cic:CICLE_v100073702m 1 878 + 878 Gaps:18 97.85 885 59.70 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_036850 1 826 + 826 Gaps:6 87.53 946 62.56 0.0 Glutamate receptor putative
blastp_kegg lcl|pxb:103949674 1 847 + 847 Gaps:15 87.69 967 62.85 0.0 glutamate receptor 2.7-like
blastp_kegg lcl|pop:POPTR_0018s03210g 1 823 + 823 Gaps:44 95.38 823 65.99 0.0 POPTRDRAFT_261549 hypothetical protein
blastp_pdb 3kg2_D 48 752 + 705 Gaps:103 85.30 823 24.93 1e-24 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_C 48 752 + 705 Gaps:103 85.30 823 24.93 1e-24 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_B 48 752 + 705 Gaps:103 85.30 823 24.93 1e-24 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_A 48 752 + 705 Gaps:103 85.30 823 24.93 1e-24 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3oen_A 380 461 + 82 none 28.67 286 26.83 8e-06 mol:protein length:286 Glutamate [NMDA] receptor subunit epsilon-4
blastp_pdb 3oem_A 380 461 + 82 none 28.67 286 26.83 8e-06 mol:protein length:286 Glutamate [NMDA] receptor subunit epsilon-4
blastp_pdb 3oel_A 380 461 + 82 none 28.67 286 26.83 8e-06 mol:protein length:286 Glutamate [NMDA] receptor subunit epsilon-4
blastp_pdb 3oek_A 380 461 + 82 none 28.67 286 26.83 8e-06 mol:protein length:286 Glutamate [NMDA] receptor subunit epsilon-4
blastp_uniprot_sprot sp|Q9C5V5|GLR28_ARATH 1 826 + 826 Gaps:32 84.27 947 55.89 0.0 Glutamate receptor 2.8 OS Arabidopsis thaliana GN GLR2.8 PE 2 SV 2
blastp_uniprot_sprot sp|Q8LGN0|GLR27_ARATH 1 818 + 818 Gaps:33 82.88 952 54.75 0.0 Glutamate receptor 2.7 OS Arabidopsis thaliana GN GLR2.7 PE 2 SV 3
blastp_uniprot_sprot sp|O81078|GLR29_ARATH 1 848 + 848 Gaps:44 87.45 940 53.77 0.0 Glutamate receptor 2.9 OS Arabidopsis thaliana GN GLR2.9 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SHV1|GLR22_ARATH 1 715 + 715 Gaps:10 77.28 920 53.31 0.0 Glutamate receptor 2.2 OS Arabidopsis thaliana GN GLR2.2 PE 2 SV 1
blastp_uniprot_sprot sp|O04660|GLR21_ARATH 1 761 + 761 Gaps:28 84.46 901 50.99 0.0 Glutamate receptor 2.1 OS Arabidopsis thaliana GN GLR2.1 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SHV2|GLR23_ARATH 1 753 + 753 Gaps:19 84.25 895 49.07 0.0 Glutamate receptor 2.3 OS Arabidopsis thaliana GN GLR2.3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LFN5|GLR25_ARATH 1 752 + 752 Gaps:15 81.37 918 50.07 0.0 Glutamate receptor 2.5 OS Arabidopsis thaliana GN GLR2.5 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LFN8|GLR26_ARATH 1 752 + 752 Gaps:14 77.77 967 48.14 0.0 Glutamate receptor 2.6 OS Arabidopsis thaliana GN GLR2.6 PE 2 SV 2
blastp_uniprot_sprot sp|O81776|GLR24_ARATH 1 707 + 707 Gaps:27 76.79 896 50.73 0.0 Glutamate receptor 2.4 OS Arabidopsis thaliana GN GLR2.4 PE 2 SV 2
blastp_uniprot_sprot sp|Q9C8E7|GLR33_ARATH 3 789 + 787 Gaps:48 85.64 933 36.80 8e-166 Glutamate receptor 3.3 OS Arabidopsis thaliana GN GLR3.3 PE 2 SV 1
rpsblast_cdd gnl|CDD|107361 1 313 + 313 Gaps:53 78.29 350 40.51 3e-77 cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and like glutamate and other transmitters acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins and activation causes a decrease in calcium an increase in potassium membrane conductance and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release for example.
rpsblast_cdd gnl|CDD|189368 481 733 + 253 Gaps:16 99.63 268 29.21 3e-61 pfam00060 Lig_chan Ligand-gated ion channel. This family includes the four transmembrane regions of the ionotropic glutamate receptors and NMDA receptors.

26 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 45 190 146 G3DSA:3.40.50.2300 none none none
Gene3D 191 278 88 G3DSA:3.40.50.2300 none none none
Gene3D 7 44 38 G3DSA:3.40.50.2300 none none none
SMART 352 702 351 SM00079 none Eukaryotic homologues of bacterial periplasmic substrate binding proteins. IPR001320
SUPERFAMILY 587 702 116 SSF53850 none none none
SUPERFAMILY 329 484 156 SSF53850 none none none
PANTHER 1 309 309 PTHR18966 none none none
Phobius 723 747 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 479 479 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 480 500 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 467 603 137 G3DSA:1.10.287.70 none none none
PIRSF 1 814 814 PIRSF037090 none none IPR017103
PANTHER 1 309 309 PTHR18966:SF6 none none none
PANTHER 333 766 434 PTHR18966:SF6 none none none
Phobius 539 558 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 480 733 254 PF00060 none Ligand-gated ion channel IPR001320
Pfam 7 291 285 PF01094 none Receptor family ligand binding region IPR001828
Phobius 559 722 164 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 501 538 38 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 333 766 434 PTHR18966 none none none
Gene3D 659 701 43 G3DSA:3.40.190.10 none none none
Gene3D 349 453 105 G3DSA:3.40.190.10 none none none
SUPERFAMILY 333 345 13 SSF53822 none none IPR028082
SUPERFAMILY 5 304 300 SSF53822 none none IPR028082
Phobius 748 879 132 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 377 702 326 PF00497 none Bacterial extracellular solute-binding proteins, family 3 none

3 Localization

Analysis Start End Length
TMHMM 478 500 22
TMHMM 538 560 22
TMHMM 724 746 22

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting