Protein : Qrob_P0164380.2 Q. robur
Protein Identifier  ? Qrob_P0164380.2 Organism . Name  Quercus robur
Score  11.2 Score Type  egn
Protein Description  (M=3) K17600 - vacuolar protein sorting-associated protein 54 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 457  
Kegg Orthology  K17600
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0042147 retrograde transport, endosome to Golgi The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport.

20 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103427771 12 456 + 445 Gaps:35 73.96 649 73.12 0.0 vacuolar protein sorting-associated protein 54 chloroplastic-like
blastp_kegg lcl|pxb:103934951 11 456 + 446 Gaps:35 46.93 1025 73.18 0.0 vacuolar protein sorting-associated protein 54 chloroplastic-like
blastp_kegg lcl|pxb:103930365 11 456 + 446 Gaps:35 46.93 1025 73.18 0.0 vacuolar protein sorting-associated protein 54 chloroplastic-like
blastp_kegg lcl|pper:PRUPE_ppa000757mg 11 456 + 446 Gaps:37 47.63 1014 72.88 0.0 hypothetical protein
blastp_kegg lcl|mdm:103434241 11 456 + 446 Gaps:35 46.84 1027 73.18 0.0 vacuolar protein sorting-associated protein 54 chloroplastic
blastp_kegg lcl|fve:101304883 15 455 + 441 Gaps:37 46.39 1026 74.16 0.0 vacuolar protein sorting-associated protein 54-like
blastp_kegg lcl|mdm:103423599 11 456 + 446 Gaps:34 46.74 1027 72.92 0.0 vacuolar protein sorting-associated protein 54 chloroplastic-like
blastp_kegg lcl|pmum:103318873 11 456 + 446 Gaps:38 48.74 989 72.82 0.0 vacuolar protein sorting-associated protein 54 chloroplastic
blastp_kegg lcl|pxb:103968085 11 456 + 446 Gaps:34 46.74 1027 72.08 0.0 vacuolar protein sorting-associated protein 54 chloroplastic-like
blastp_kegg lcl|vvi:100264854 12 456 + 445 Gaps:37 46.30 1041 73.03 0.0 vacuolar protein sorting-associated protein 54-like
blastp_uniprot_sprot sp|F4JT76|VPS54_ARATH 1 451 + 451 Gaps:46 45.94 1034 60.84 0.0 Vacuolar protein sorting-associated protein 54 chloroplastic OS Arabidopsis thaliana GN VPS54 PE 1 SV 1
blastp_uniprot_sprot sp|Q9JMK8|VPS54_RAT 22 325 + 304 Gaps:65 27.46 965 37.36 1e-33 Vacuolar protein sorting-associated protein 54 OS Rattus norvegicus GN Vps54 PE 2 SV 1
blastp_uniprot_sprot sp|Q9P1Q0|VPS54_HUMAN 22 325 + 304 Gaps:65 27.12 977 36.98 2e-33 Vacuolar protein sorting-associated protein 54 OS Homo sapiens GN VPS54 PE 1 SV 2
blastp_uniprot_sprot sp|Q5SPW0|VPS54_MOUSE 22 325 + 304 Gaps:65 27.12 977 36.60 2e-33 Vacuolar protein sorting-associated protein 54 OS Mus musculus GN Vps54 PE 1 SV 1
blastp_uniprot_sprot sp|Q9VLC0|VPS54_DROME 26 384 + 359 Gaps:62 31.81 940 33.44 5e-31 Vacuolar protein sorting-associated protein 54 OS Drosophila melanogaster GN scat PE 1 SV 1
blastp_uniprot_sprot sp|Q22639|VPS54_CAEEL 64 325 + 262 Gaps:57 22.21 1058 29.79 9e-16 Vacuolar protein sorting-associated protein 54 OS Caenorhabditis elegans GN vps-54 PE 1 SV 2
blastp_uniprot_sprot sp|O14093|VPS54_SCHPO 201 373 + 173 Gaps:14 18.23 949 31.21 1e-13 Vacuolar protein sorting-associated protein 54 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN vps54 PE 1 SV 1
blastp_uniprot_sprot sp|Q61JT8|VPS54_CAEBR 64 325 + 262 Gaps:55 22.84 1055 26.56 2e-11 Vacuolar protein sorting-associated protein 54 OS Caenorhabditis briggsae GN vps-54 PE 3 SV 1
rpsblast_cdd gnl|CDD|116538 206 329 + 124 Gaps:12 99.25 133 47.73 3e-37 pfam07928 Vps54 Vps54-like protein. This family contains various proteins that are homologs of the yeast Vps54 protein such as the rat homolog the human homolog and the mouse homolog. In yeast Vps54 associates with Vps52 and Vps53 proteins to form a trimolecular complex that is involved in protein transport between Golgi endosomal and vacuolar compartments. All Vps54 homologs contain a coiled coil region (not found in the region featured in this family) and multiple dileucine motifs.
rpsblast_kog gnl|CDD|37326 15 387 + 373 Gaps:56 33.75 951 38.01 1e-52 KOG2115 KOG2115 KOG2115 Vacuolar sorting protein VPS45 [Intracellular trafficking secretion and vesicular transport].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 176 428 253 PTHR12965:SF0 none none none
PANTHER 16 136 121 PTHR12965:SF0 none none none
PANTHER 176 428 253 PTHR12965 none none none
Pfam 207 328 122 PF07928 none Vps54-like protein IPR012501
PANTHER 16 136 121 PTHR12965 none none none

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2002_QTL17_peak_Bud_burst_A4 Qrob_Chr12 12 s_1CTJ3J_556 s_1CTJ3J_556 0 0 25 lod 2,9 6
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting