Protein : Qrob_P0162970.2 Q. robur
Protein Identifier  ? Qrob_P0162970.2 Organism . Name  Quercus robur
Score  20.1 Score Type  egn
Protein Description  (M=2) KOG0556//KOG1885//KOG2411 - Aspartyl-tRNA synthetase [Translation ribosomal structure and biogenesis]. // Lysyl-tRNA synthetase (class II) [Translation ribosomal structure and biogenesis]. // Aspartyl-tRNA synthetase mitochondrial [Translation ribosomal structure and biogenesis]. Code Enzyme  EC:6.1.1.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 171  
Kegg Orthology  K04567
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0004812 aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO:0006418 tRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO:0004824 lysine-tRNA ligase activity Catalysis of the reaction: ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys).
GO:0006430 lysyl-tRNA aminoacylation The process of coupling lysine to lysyl-tRNA, catalyzed by lysyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|zma:103654174 27 152 + 126 none 42.86 294 92.86 1e-82 lysine--tRNA ligase-like
blastp_kegg lcl|pop:POPTR_0018s09760g 27 152 + 126 none 21.07 598 95.24 4e-81 POPTRDRAFT_262154 hypothetical protein
blastp_kegg lcl|pop:POPTR_0018s09780g 27 152 + 126 none 21.25 593 95.24 5e-81 hypothetical protein
blastp_kegg lcl|vvi:100262532 27 152 + 126 none 20.36 619 94.44 1e-80 lysyl-tRNA synthetase-like
blastp_kegg lcl|csv:101229946 27 152 + 126 none 34.71 363 92.86 2e-80 lysine--tRNA ligase-like
blastp_kegg lcl|pop:POPTR_0006s17970g 27 152 + 126 none 20.90 603 94.44 8e-80 Lysyl-tRNA synthetase family protein
blastp_kegg lcl|vvi:100242505 27 152 + 126 none 20.32 620 93.65 1e-79 lysyl-tRNA synthetase-like
blastp_kegg lcl|sot:102596211 19 152 + 134 Gaps:1 22.20 599 91.73 1e-79 lysine--tRNA ligase-like
blastp_kegg lcl|cic:CICLE_v10007700mg 27 152 + 126 none 24.80 508 91.27 2e-79 hypothetical protein
blastp_kegg lcl|zma:100273907 27 152 + 126 none 28.83 437 92.86 4e-79 pco072809(80) LOC100273907
blastp_pdb 3bju_D 27 152 + 126 none 24.18 521 73.02 2e-63 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3bju_C 27 152 + 126 none 24.18 521 73.02 2e-63 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3bju_B 27 152 + 126 none 24.18 521 73.02 2e-63 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3bju_A 27 152 + 126 none 24.18 521 73.02 2e-63 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 1lyl_C 27 140 + 114 none 22.62 504 59.65 4e-44 mol:protein length:504 LYSYL-TRNA SYNTHETASE (LYSU)
blastp_pdb 1lyl_B 27 140 + 114 none 22.62 504 59.65 4e-44 mol:protein length:504 LYSYL-TRNA SYNTHETASE (LYSU)
blastp_pdb 1lyl_A 27 140 + 114 none 22.62 504 59.65 4e-44 mol:protein length:504 LYSYL-TRNA SYNTHETASE (LYSU)
blastp_pdb 1e24_A 27 140 + 114 none 22.62 504 59.65 4e-44 mol:protein length:504 LYSYL-TRNA SYNTHETASE
blastp_pdb 1e22_A 27 140 + 114 none 22.62 504 59.65 4e-44 mol:protein length:504 LYSYL-TRNA SYNTHETASE
blastp_pdb 1e1t_A 27 140 + 114 none 22.62 504 59.65 4e-44 mol:protein length:504 LYSYL-TRNA SYNTHETASE HEAT INDUCIBLE
blastp_uniprot_sprot sp|Q6F2U9|SYK_ORYSJ 27 152 + 126 none 20.93 602 92.06 2e-79 Lysine--tRNA ligase OS Oryza sativa subsp. japonica GN Os03g0586800 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZPI1|SYK_ARATH 27 152 + 126 none 20.13 626 90.48 5e-79 Lysine--tRNA ligase OS Arabidopsis thaliana GN At3g11710 PE 2 SV 1
blastp_uniprot_sprot sp|Q43776|SYK_SOLLC 27 152 + 126 none 21.43 588 76.98 1e-67 Lysine--tRNA ligase OS Solanum lycopersicum GN LYSRS PE 2 SV 1
blastp_uniprot_sprot sp|P37879|SYK_CRIGR 27 152 + 126 none 21.11 597 76.19 9e-65 Lysine--tRNA ligase OS Cricetulus griseus GN KARS PE 1 SV 1
blastp_uniprot_sprot sp|Q99MN1|SYK_MOUSE 27 152 + 126 none 21.18 595 75.40 2e-64 Lysine--tRNA ligase OS Mus musculus GN Kars PE 1 SV 1
blastp_uniprot_sprot sp|Q15046|SYK_HUMAN 27 152 + 126 none 21.11 597 73.02 6e-63 Lysine--tRNA ligase OS Homo sapiens GN KARS PE 1 SV 3
blastp_uniprot_sprot sp|Q22099|SYK_CAEEL 27 153 + 127 Gaps:1 22.38 572 71.09 1e-61 Lysine--tRNA ligase OS Caenorhabditis elegans GN krs-1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9UUE6|SYKC_SCHPO 27 152 + 126 none 21.32 591 73.02 3e-59 Lysine--tRNA ligase cytoplasmic OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN krs1 PE 3 SV 1
blastp_uniprot_sprot sp|P15180|SYKC_YEAST 27 153 + 127 Gaps:1 21.66 591 71.09 5e-59 Lysine--tRNA ligase cytoplasmic OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN KRS1 PE 1 SV 2
blastp_uniprot_sprot sp|Q8SS56|SYKC_ENCCU 27 155 + 129 Gaps:2 25.69 510 66.41 1e-56 Probable lysine--tRNA ligase cytoplasmic OS Encephalitozoon cuniculi (strain GB-M1) GN ECU04_0580 PE 3 SV 2

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 27 151 125 PTHR22594:SF4 none none none
PANTHER 27 151 125 PTHR22594 "Reactome:REACT_71";signature_desc=ASPARTYL/LYSYL-TRNA SYNTHETASE none IPR018150
SUPERFAMILY 27 152 126 SSF55681 none none none
ProSiteProfiles 27 170 144 PS50862 "Reactome:REACT_71" Aminoacyl-transfer RNA synthetases class-II family profile. IPR006195
Pfam 27 132 106 PF00152 "Reactome:REACT_71" tRNA synthetases class II (D, K and N) IPR004364
PRINTS 36 52 17 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 83 100 18 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 65 78 14 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
Gene3D 27 148 122 G3DSA:3.30.930.10 none none none

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9

0 Targeting