Protein : Qrob_P0160900.2 Q. robur
Protein Identifier  ? Qrob_P0160900.2 Organism . Name  Quercus robur
Score  99.0 Score Type  egn
Protein Description  (M=3) PTHR12403 - MBP-1 INTERACTING PROTEIN-2A Gene Prediction Quality  validated
Protein length 

Sequence

Length: 156  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0006888 ER to Golgi vesicle-mediated transport The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.

26 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103946367 41 155 + 115 Gaps:7 90.37 135 77.05 4e-54 trafficking protein particle complex subunit 2-like
blastp_kegg lcl|pxb:103944994 41 155 + 115 Gaps:7 90.37 135 77.05 4e-54 trafficking protein particle complex subunit 2-like
blastp_kegg lcl|pmum:103319004 41 150 + 110 Gaps:6 85.93 135 76.72 5e-54 trafficking protein particle complex subunit 2
blastp_kegg lcl|pper:PRUPE_ppa013209mg 41 150 + 110 Gaps:6 85.93 135 76.72 5e-54 hypothetical protein
blastp_kegg lcl|fve:101300283 41 150 + 110 Gaps:6 85.93 135 75.86 8e-54 trafficking protein particle complex subunit 2-like
blastp_kegg lcl|mdm:103402430 41 155 + 115 Gaps:7 90.37 135 76.23 3e-53 trafficking protein particle complex subunit 2
blastp_kegg lcl|tcc:TCM_019945 41 150 + 110 Gaps:6 85.93 135 75.86 3e-53 SNARE-like superfamily protein isoform 1
blastp_kegg lcl|gmx:100527093 41 150 + 110 Gaps:6 85.93 135 77.59 4e-53 uncharacterized LOC100527093
blastp_kegg lcl|pop:POPTR_0001s03500g 41 155 + 115 Gaps:7 90.37 135 73.77 7e-53 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10022803mg 41 150 + 110 Gaps:6 85.93 135 75.00 1e-52 hypothetical protein
blastp_pdb 2j3w_C 41 140 + 100 Gaps:9 76.76 142 39.45 7e-21 mol:protein length:142 TRAFFICKING PROTEIN PARTICLE COMPLEX PROTEIN
blastp_pdb 2j3w_A 41 140 + 100 Gaps:9 76.76 142 39.45 7e-21 mol:protein length:142 TRAFFICKING PROTEIN PARTICLE COMPLEX PROTEIN
blastp_pdb 1h3q_A 41 140 + 100 Gaps:9 77.86 140 39.45 7e-21 mol:protein length:140 SEDLIN
blastp_uniprot_sprot sp|F1SRI0|TPPC2_PIG 41 140 + 100 Gaps:9 77.86 140 39.45 2e-20 Trafficking protein particle complex subunit 2 OS Sus scrofa GN TRAPPC2 PE 2 SV 2
blastp_uniprot_sprot sp|Q3T0F2|TPPC2_BOVIN 41 140 + 100 Gaps:9 77.86 140 39.45 2e-20 Trafficking protein particle complex subunit 2 OS Bos taurus GN TRAPPC2 PE 2 SV 1
blastp_uniprot_sprot sp|Q5RES6|TPPC2_PONAB 41 140 + 100 Gaps:9 77.86 140 39.45 2e-20 Trafficking protein particle complex subunit 2 OS Pongo abelii GN TRAPPC2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9CQP2|TPPC2_MOUSE 41 140 + 100 Gaps:9 77.86 140 39.45 3e-20 Trafficking protein particle complex subunit 2 OS Mus musculus GN Trappc2 PE 1 SV 1
blastp_uniprot_sprot sp|Q5ZKP4|TPPC2_CHICK 41 140 + 100 Gaps:9 77.86 140 39.45 3e-20 Trafficking protein particle complex subunit 2 OS Gallus gallus GN TRAPPC2 PE 2 SV 2
blastp_uniprot_sprot sp|E2QV03|TPPC2_CANFA 41 140 + 100 Gaps:9 77.86 140 39.45 4e-20 Trafficking protein particle complex subunit 2 OS Canis familiaris GN TRAPPC2 PE 3 SV 1
blastp_uniprot_sprot sp|P0DI82|TPC2B_HUMAN 41 140 + 100 Gaps:9 77.86 140 39.45 4e-20 Trafficking protein particle complex subunit 2 protein TRAPPC2P1 OS Homo sapiens GN TRAPPC2P1 PE 1 SV 1
blastp_uniprot_sprot sp|P0DI81|TPC2A_HUMAN 41 140 + 100 Gaps:9 77.86 140 39.45 4e-20 Trafficking protein particle complex subunit 2 OS Homo sapiens GN TRAPPC2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9VUZ1|TPPC2_DROME 43 139 + 97 Gaps:9 76.26 139 41.51 7e-20 Probable trafficking protein particle complex subunit 2 OS Drosophila melanogaster GN l(3)72Dh PE 2 SV 2
blastp_uniprot_sprot sp|Q08CN0|TPPC2_DANRE 41 140 + 100 Gaps:9 77.86 140 37.61 7e-20 Trafficking protein particle complex subunit 2 OS Danio rerio GN trappc2 PE 2 SV 1
rpsblast_cdd gnl|CDD|203060 49 141 + 93 Gaps:10 79.53 127 45.54 8e-26 pfam04628 Sedlin_N Sedlin N-terminal conserved region. Mutations in this protein are associated with the X-linked spondyloepiphyseal dysplasia tarda syndrome (OMIM:313400). This family represents an N-terminal conserved region.
rpsblast_cdd gnl|CDD|35162 44 142 + 99 Gaps:9 79.41 136 31.48 8e-15 COG5603 TRS20 Subunit of TRAPP an ER-Golgi tethering complex [Cell motility and secretion].
rpsblast_kog gnl|CDD|38697 44 141 + 98 Gaps:10 77.70 139 50.93 1e-26 KOG3487 KOG3487 KOG3487 TRAPP 20 K subunit [Intracellular trafficking secretion and vesicular transport].

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 49 141 93 PF04628 none Sedlin, N-terminal conserved region IPR006722
Gene3D 42 141 100 G3DSA:3.30.450.70 none none none
SUPERFAMILY 41 141 101 SSF64356 none none IPR011012
PANTHER 37 141 105 PTHR12403 none none IPR006722

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 25   Secretory pathway 4 0.413 0.154 NON-PLANT 25