Protein : Qrob_P0153220.2 Q. robur
Protein Identifier  ? Qrob_P0153220.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) K14402 - cleavage and polyadenylation specificity factor subunit 2 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 254  
Kegg Orthology  K14402
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006378 mRNA polyadenylation The enzymatic addition of a sequence of 40-200 adenylyl residues at the 3' end of a eukaryotic mRNA primary transcript.
GO:0005847 mRNA cleavage and polyadenylation specificity factor complex A multisubunit complex that binds to the canonical AAUAAA hexamer and to U-rich upstream sequence elements on the pre-mRNA, thereby stimulating the otherwise weakly active and nonspecific polymerase to elongate efficiently RNAs containing a poly(A) signal.
GO:0006379 mRNA cleavage Any process in which a pre-mRNA or mRNA molecule is cleaved at specific sites or in a regulated manner.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101226932 1 241 + 241 Gaps:14 48.30 501 74.38 5e-84 cleavage and polyadenylation specificity factor subunit 2-like
blastp_kegg lcl|cam:101489524 1 241 + 241 Gaps:14 32.70 740 75.21 1e-83 cleavage and polyadenylation specificity factor subunit 2-like
blastp_kegg lcl|pvu:PHAVU_004G114000g 1 253 + 253 Gaps:14 34.37 739 72.83 2e-83 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa001928mg 1 253 + 253 Gaps:14 34.32 740 72.05 2e-83 hypothetical protein
blastp_kegg lcl|pmum:103333205 1 253 + 253 Gaps:14 34.32 740 72.05 3e-83 cleavage and polyadenylation specificity factor subunit 2
blastp_kegg lcl|gmx:100777002 1 253 + 253 Gaps:14 34.37 739 71.26 9e-83 cleavage and polyadenylation specificity factor subunit 2-like
blastp_kegg lcl|cmo:103484088 1 241 + 241 Gaps:14 32.79 738 74.79 2e-82 cleavage and polyadenylation specificity factor subunit 2
blastp_kegg lcl|csv:101215673 1 241 + 241 Gaps:14 32.79 738 74.79 2e-82 cleavage and polyadenylation specificity factor subunit 2-like
blastp_kegg lcl|gmx:100796817 1 253 + 253 Gaps:14 34.42 738 70.87 1e-81 cleavage and polyadenylation specificity factor subunit 2-like
blastp_kegg lcl|mdm:103439774 1 241 + 241 Gaps:14 32.70 740 73.97 1e-80 cleavage and polyadenylation specificity factor subunit 2
blastp_pdb 2i7v_A 94 237 + 144 Gaps:6 30.94 459 33.10 9e-18 mol:protein length:459 Cleavage and polyadenylation specificity fact
blastp_pdb 2i7t_A 94 237 + 144 Gaps:6 30.94 459 33.10 9e-18 mol:protein length:459 Cleavage and polyadenylation specificity fact
blastp_pdb 2i7x_A 53 238 + 186 Gaps:36 29.01 717 28.37 1e-14 mol:protein length:717 Protein CFT2
blastp_pdb 3ie2_D 62 237 + 176 Gaps:20 43.16 431 26.88 2e-09 mol:protein length:431 Ribonuclease TTHA0252
blastp_pdb 3ie2_C 62 237 + 176 Gaps:20 43.16 431 26.88 2e-09 mol:protein length:431 Ribonuclease TTHA0252
blastp_pdb 3ie2_B 62 237 + 176 Gaps:20 43.16 431 26.88 2e-09 mol:protein length:431 Ribonuclease TTHA0252
blastp_pdb 3ie2_A 62 237 + 176 Gaps:20 43.16 431 26.88 2e-09 mol:protein length:431 Ribonuclease TTHA0252
blastp_pdb 3ie1_D 62 237 + 176 Gaps:20 43.16 431 26.88 2e-09 mol:protein length:431 Ribonuclease TTHA0252
blastp_pdb 3ie1_C 62 237 + 176 Gaps:20 43.16 431 26.88 2e-09 mol:protein length:431 Ribonuclease TTHA0252
blastp_pdb 3ie1_B 62 237 + 176 Gaps:20 43.16 431 26.88 2e-09 mol:protein length:431 Ribonuclease TTHA0252
blastp_uniprot_sprot sp|Q9LKF9|CPSF2_ARATH 1 253 + 253 Gaps:13 34.51 739 63.92 7e-71 Cleavage and polyadenylation specificity factor subunit 2 OS Arabidopsis thaliana GN CPSF100 PE 1 SV 2
blastp_uniprot_sprot sp|Q652P4|CPSF2_ORYSJ 1 253 + 253 Gaps:14 34.42 738 56.69 2e-64 Cleavage and polyadenylation specificity factor subunit 2 OS Oryza sativa subsp. japonica GN Os09g0569400 PE 2 SV 1
blastp_uniprot_sprot sp|Q9V3D6|CPSF2_DROME 63 239 + 177 Gaps:15 25.40 756 40.10 1e-37 Probable cleavage and polyadenylation specificity factor subunit 2 OS Drosophila melanogaster GN Cpsf100 PE 1 SV 1
blastp_uniprot_sprot sp|Q9W799|CPSF2_XENLA 63 253 + 191 Gaps:20 26.18 783 37.07 1e-33 Cleavage and polyadenylation specificity factor subunit 2 OS Xenopus laevis GN cpsf2 PE 1 SV 1
blastp_uniprot_sprot sp|Q10568|CPSF2_BOVIN 1 253 + 253 Gaps:20 32.74 782 37.50 2e-33 Cleavage and polyadenylation specificity factor subunit 2 OS Bos taurus GN CPSF2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9P2I0|CPSF2_HUMAN 1 253 + 253 Gaps:20 32.74 782 37.50 3e-33 Cleavage and polyadenylation specificity factor subunit 2 OS Homo sapiens GN CPSF2 PE 1 SV 2
blastp_uniprot_sprot sp|O35218|CPSF2_MOUSE 1 253 + 253 Gaps:20 32.74 782 37.50 3e-33 Cleavage and polyadenylation specificity factor subunit 2 OS Mus musculus GN Cpsf2 PE 1 SV 1
blastp_uniprot_sprot sp|Q55BS1|CPSF2_DICDI 65 239 + 175 Gaps:17 24.49 784 37.50 8e-32 Cleavage and polyadenylation specificity factor subunit 2 OS Dictyostelium discoideum GN cpsf2 PE 3 SV 1
blastp_uniprot_sprot sp|O17403|CPSF2_CAEEL 58 250 + 193 Gaps:21 24.67 843 36.06 3e-30 Probable cleavage and polyadenylation specificity factor subunit 2 OS Caenorhabditis elegans GN cpsf-2 PE 3 SV 1
blastp_uniprot_sprot sp|A8XUS3|CPSF2_CAEBR 58 250 + 193 Gaps:21 24.70 842 34.13 2e-27 Probable cleavage and polyadenylation specificity factor subunit 2 OS Caenorhabditis briggsae GN cpsf-2 PE 3 SV 2

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 5 249 245 SSF56281 none none IPR001279
PANTHER 63 241 179 PTHR11203:SF5 none none IPR027075
SMART 126 243 118 SM01027 none Beta-Casp domain IPR022712
Gene3D 9 51 43 G3DSA:3.60.15.10 none none IPR001279
Pfam 127 239 113 PF10996 none Beta-Casp domain IPR022712
PANTHER 63 241 179 PTHR11203 none none none

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2003_QTL13_peak_Bud_burst_A4 Qrob_Chr09 9 s_1AP8MN_635 s_1A3QQ_692 18,18 10,88 25,88 lod 3,4 7,2
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran2_2002_QTL12_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 4,33 33,33 lod 6,5 9,1
Bourran2_2014_nEpis_A4 Qrob_Chr09 9 v_AQ16YP22_198 s_1BM1HR_1387 18,91 18,91 43,71 lod 2,6242 5,9

0 Targeting