Protein : Qrob_P0153200.2 Q. robur
Protein Identifier  ? Qrob_P0153200.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) K14402 - cleavage and polyadenylation specificity factor subunit 2 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 238  
Kegg Orthology  K14402
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006378 mRNA polyadenylation The enzymatic addition of a sequence of 40-200 adenylyl residues at the 3' end of a eukaryotic mRNA primary transcript.
GO:0005847 mRNA cleavage and polyadenylation specificity factor complex A multisubunit complex that binds to the canonical AAUAAA hexamer and to U-rich upstream sequence elements on the pre-mRNA, thereby stimulating the otherwise weakly active and nonspecific polymerase to elongate efficiently RNAs containing a poly(A) signal.
GO:0006379 mRNA cleavage Any process in which a pre-mRNA or mRNA molecule is cleaved at specific sites or in a regulated manner.

29 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101226932 3 231 + 229 Gaps:39 45.91 501 75.22 2e-104 cleavage and polyadenylation specificity factor subunit 2-like
blastp_kegg lcl|cmo:103484088 3 231 + 229 Gaps:39 31.17 738 75.65 8e-103 cleavage and polyadenylation specificity factor subunit 2
blastp_kegg lcl|csv:101215673 3 231 + 229 Gaps:39 31.17 738 75.65 8e-103 cleavage and polyadenylation specificity factor subunit 2-like
blastp_kegg lcl|cam:101489524 3 231 + 229 Gaps:39 31.08 740 74.78 2e-100 cleavage and polyadenylation specificity factor subunit 2-like
blastp_kegg lcl|gmx:100777002 3 231 + 229 Gaps:39 31.12 739 74.78 4e-100 cleavage and polyadenylation specificity factor subunit 2-like
blastp_kegg lcl|pvu:PHAVU_004G114000g 1 231 + 231 Gaps:39 31.39 739 73.71 8e-100 hypothetical protein
blastp_kegg lcl|gmx:100796817 3 231 + 229 Gaps:39 31.17 738 73.91 5e-99 cleavage and polyadenylation specificity factor subunit 2-like
blastp_kegg lcl|pmum:103333205 3 231 + 229 Gaps:39 31.08 740 73.48 2e-98 cleavage and polyadenylation specificity factor subunit 2
blastp_kegg lcl|pper:PRUPE_ppa001928mg 3 231 + 229 Gaps:39 31.08 740 73.48 2e-98 hypothetical protein
blastp_kegg lcl|vvi:100267865 1 231 + 231 Gaps:39 31.35 740 73.71 6e-96 cleavage and polyadenylation specificity factor subunit 2-like
blastp_pdb 2i7x_A 1 170 + 170 Gaps:42 27.06 717 27.84 9e-13 mol:protein length:717 Protein CFT2
blastp_pdb 2i7v_A 7 217 + 211 Gaps:45 45.32 459 26.92 1e-11 mol:protein length:459 Cleavage and polyadenylation specificity fact
blastp_pdb 2i7t_A 7 217 + 211 Gaps:45 45.32 459 26.92 1e-11 mol:protein length:459 Cleavage and polyadenylation specificity fact
blastp_uniprot_sprot sp|Q9LKF9|CPSF2_ARATH 3 228 + 226 Gaps:38 30.85 739 65.79 6e-86 Cleavage and polyadenylation specificity factor subunit 2 OS Arabidopsis thaliana GN CPSF100 PE 1 SV 2
blastp_uniprot_sprot sp|Q652P4|CPSF2_ORYSJ 4 231 + 228 Gaps:39 31.03 738 65.07 2e-81 Cleavage and polyadenylation specificity factor subunit 2 OS Oryza sativa subsp. japonica GN Os09g0569400 PE 2 SV 1
blastp_uniprot_sprot sp|Q9V3D6|CPSF2_DROME 4 219 + 216 Gaps:40 29.10 756 42.27 4e-43 Probable cleavage and polyadenylation specificity factor subunit 2 OS Drosophila melanogaster GN Cpsf100 PE 1 SV 1
blastp_uniprot_sprot sp|O35218|CPSF2_MOUSE 3 219 + 217 Gaps:41 28.13 782 40.91 5e-41 Cleavage and polyadenylation specificity factor subunit 2 OS Mus musculus GN Cpsf2 PE 1 SV 1
blastp_uniprot_sprot sp|Q10568|CPSF2_BOVIN 3 219 + 217 Gaps:41 28.13 782 40.91 6e-41 Cleavage and polyadenylation specificity factor subunit 2 OS Bos taurus GN CPSF2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9P2I0|CPSF2_HUMAN 3 219 + 217 Gaps:41 28.13 782 40.91 6e-41 Cleavage and polyadenylation specificity factor subunit 2 OS Homo sapiens GN CPSF2 PE 1 SV 2
blastp_uniprot_sprot sp|Q9W799|CPSF2_XENLA 3 219 + 217 Gaps:41 28.10 783 40.91 2e-40 Cleavage and polyadenylation specificity factor subunit 2 OS Xenopus laevis GN cpsf2 PE 1 SV 1
blastp_uniprot_sprot sp|Q55BS1|CPSF2_DICDI 3 219 + 217 Gaps:41 28.32 784 37.84 2e-35 Cleavage and polyadenylation specificity factor subunit 2 OS Dictyostelium discoideum GN cpsf2 PE 3 SV 1
blastp_uniprot_sprot sp|O74740|CFT2_SCHPO 1 221 + 221 Gaps:49 28.86 797 37.83 5e-35 Cleavage factor two protein 2 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN cft2 PE 1 SV 1
blastp_uniprot_sprot sp|O17403|CPSF2_CAEEL 15 219 + 205 Gaps:42 24.79 843 35.89 3e-27 Probable cleavage and polyadenylation specificity factor subunit 2 OS Caenorhabditis elegans GN cpsf-2 PE 3 SV 1
rpsblast_cdd gnl|CDD|31429 6 221 + 216 Gaps:45 48.01 427 27.80 1e-16 COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation ribosomal structure and biogenesis].
rpsblast_cdd gnl|CDD|198095 105 219 + 115 Gaps:17 77.78 126 35.71 7e-14 smart01027 Beta-Casp Beta-Casp domain. The beta-CASP domain is found C terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains.
rpsblast_cdd gnl|CDD|204576 105 219 + 115 Gaps:23 77.42 124 35.42 1e-10 pfam10996 Beta-Casp Beta-Casp domain. The beta-CASP domain is found C terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains.
rpsblast_kog gnl|CDD|36350 1 220 + 220 Gaps:41 29.19 764 48.88 2e-64 KOG1135 KOG1135 KOG1135 mRNA cleavage and polyadenylation factor II complex subunit CFT2 (CPSF subunit) [RNA processing and modification].
rpsblast_kog gnl|CDD|36351 6 215 + 210 Gaps:48 40.72 501 27.94 8e-14 KOG1136 KOG1136 KOG1136 Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification].
rpsblast_kog gnl|CDD|36352 5 219 + 215 Gaps:47 31.74 668 28.77 3e-13 KOG1137 KOG1137 KOG1137 mRNA cleavage and polyadenylation factor II complex BRR5 (CPSF subunit) [RNA processing and modification].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 6 219 214 PTHR11203 none none none
SMART 95 223 129 SM01027 none Beta-Casp domain IPR022712
PANTHER 6 219 214 PTHR11203:SF5 none none IPR027075
Pfam 105 219 115 PF10996 none Beta-Casp domain IPR022712
SUPERFAMILY 3 220 218 SSF56281 none none IPR001279

0 Localization

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2003_QTL13_peak_Bud_burst_A4 Qrob_Chr09 9 s_1AP8MN_635 s_1A3QQ_692 18,18 10,88 25,88 lod 3,4 7,2
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran2_2002_QTL12_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 4,33 33,33 lod 6,5 9,1
Bourran2_2014_nEpis_A4 Qrob_Chr09 9 v_AQ16YP22_198 s_1BM1HR_1387 18,91 18,91 43,71 lod 2,6242 5,9

0 Targeting