Protein : Qrob_P0153160.2 Q. robur
Protein Identifier  ? Qrob_P0153160.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K14402 - cleavage and polyadenylation specificity factor subunit 2 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 742  
Kegg Orthology  K14402
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006378 mRNA polyadenylation The enzymatic addition of a sequence of 40-200 adenylyl residues at the 3' end of a eukaryotic mRNA primary transcript.
GO:0005847 mRNA cleavage and polyadenylation specificity factor complex A multisubunit complex that binds to the canonical AAUAAA hexamer and to U-rich upstream sequence elements on the pre-mRNA, thereby stimulating the otherwise weakly active and nonspecific polymerase to elongate efficiently RNAs containing a poly(A) signal.
GO:0006379 mRNA cleavage Any process in which a pre-mRNA or mRNA molecule is cleaved at specific sites or in a regulated manner.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103484088 1 741 + 741 Gaps:3 100.00 738 85.09 0.0 cleavage and polyadenylation specificity factor subunit 2
blastp_kegg lcl|csv:101215673 1 741 + 741 Gaps:3 100.00 738 84.96 0.0 cleavage and polyadenylation specificity factor subunit 2-like
blastp_kegg lcl|pmum:103333205 1 741 + 741 Gaps:1 100.00 740 83.51 0.0 cleavage and polyadenylation specificity factor subunit 2
blastp_kegg lcl|pvu:PHAVU_004G114000g 1 741 + 741 Gaps:2 100.00 739 84.57 0.0 hypothetical protein
blastp_kegg lcl|gmx:100777002 1 741 + 741 Gaps:2 100.00 739 84.71 0.0 cleavage and polyadenylation specificity factor subunit 2-like
blastp_kegg lcl|mdm:103439774 1 741 + 741 Gaps:1 100.00 740 83.11 0.0 cleavage and polyadenylation specificity factor subunit 2
blastp_kegg lcl|pper:PRUPE_ppa001928mg 1 741 + 741 Gaps:1 100.00 740 82.97 0.0 hypothetical protein
blastp_kegg lcl|pxb:103934917 1 741 + 741 Gaps:1 100.00 740 82.70 0.0 cleavage and polyadenylation specificity factor subunit 2-like
blastp_kegg lcl|gmx:100796817 1 741 + 741 Gaps:3 100.00 738 84.42 0.0 cleavage and polyadenylation specificity factor subunit 2-like
blastp_kegg lcl|cam:101489524 1 741 + 741 Gaps:1 100.00 740 83.65 0.0 cleavage and polyadenylation specificity factor subunit 2-like
blastp_pdb 2i7x_A 22 462 + 441 Gaps:76 64.57 717 29.59 2e-35 mol:protein length:717 Protein CFT2
blastp_pdb 2i7v_A 30 385 + 356 Gaps:24 75.82 459 27.59 9e-34 mol:protein length:459 Cleavage and polyadenylation specificity fact
blastp_pdb 2i7t_A 30 385 + 356 Gaps:24 75.82 459 27.59 9e-34 mol:protein length:459 Cleavage and polyadenylation specificity fact
blastp_pdb 3af6_A 5 389 + 385 Gaps:34 59.14 651 25.97 4e-22 mol:protein length:651 Putative uncharacterized protein PH1404
blastp_pdb 3af5_A 5 389 + 385 Gaps:34 59.14 651 25.97 4e-22 mol:protein length:651 Putative uncharacterized protein PH1404
blastp_pdb 3ie1_D 5 385 + 381 Gaps:22 85.15 431 27.25 1e-20 mol:protein length:431 Ribonuclease TTHA0252
blastp_pdb 3ie1_C 5 385 + 381 Gaps:22 85.15 431 27.25 1e-20 mol:protein length:431 Ribonuclease TTHA0252
blastp_pdb 3ie1_B 5 385 + 381 Gaps:22 85.15 431 27.25 1e-20 mol:protein length:431 Ribonuclease TTHA0252
blastp_pdb 3ie1_A 5 385 + 381 Gaps:22 85.15 431 27.25 1e-20 mol:protein length:431 Ribonuclease TTHA0252
blastp_pdb 3ie0_D 5 385 + 381 Gaps:22 85.15 431 27.25 1e-20 mol:protein length:431 Ribonuclease TTHA0252
blastp_uniprot_sprot sp|Q9LKF9|CPSF2_ARATH 1 741 + 741 Gaps:4 100.00 739 77.00 0.0 Cleavage and polyadenylation specificity factor subunit 2 OS Arabidopsis thaliana GN CPSF100 PE 1 SV 2
blastp_uniprot_sprot sp|Q652P4|CPSF2_ORYSJ 1 741 + 741 Gaps:5 100.00 738 73.44 0.0 Cleavage and polyadenylation specificity factor subunit 2 OS Oryza sativa subsp. japonica GN Os09g0569400 PE 2 SV 1
blastp_uniprot_sprot sp|Q9V3D6|CPSF2_DROME 1 741 + 741 Gaps:79 100.00 756 39.42 3e-177 Probable cleavage and polyadenylation specificity factor subunit 2 OS Drosophila melanogaster GN Cpsf100 PE 1 SV 1
blastp_uniprot_sprot sp|O35218|CPSF2_MOUSE 1 741 + 741 Gaps:105 100.00 782 38.24 2e-173 Cleavage and polyadenylation specificity factor subunit 2 OS Mus musculus GN Cpsf2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9P2I0|CPSF2_HUMAN 1 741 + 741 Gaps:109 100.00 782 37.85 1e-172 Cleavage and polyadenylation specificity factor subunit 2 OS Homo sapiens GN CPSF2 PE 1 SV 2
blastp_uniprot_sprot sp|Q10568|CPSF2_BOVIN 1 741 + 741 Gaps:109 100.00 782 37.85 3e-172 Cleavage and polyadenylation specificity factor subunit 2 OS Bos taurus GN CPSF2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9W799|CPSF2_XENLA 1 741 + 741 Gaps:98 100.00 783 37.16 3e-168 Cleavage and polyadenylation specificity factor subunit 2 OS Xenopus laevis GN cpsf2 PE 1 SV 1
blastp_uniprot_sprot sp|Q55BS1|CPSF2_DICDI 1 738 + 738 Gaps:85 99.62 784 34.06 6e-147 Cleavage and polyadenylation specificity factor subunit 2 OS Dictyostelium discoideum GN cpsf2 PE 3 SV 1
blastp_uniprot_sprot sp|O17403|CPSF2_CAEEL 1 741 + 741 Gaps:79 88.37 843 34.36 3e-114 Probable cleavage and polyadenylation specificity factor subunit 2 OS Caenorhabditis elegans GN cpsf-2 PE 3 SV 1
blastp_uniprot_sprot sp|A8XUS3|CPSF2_CAEBR 1 645 + 645 Gaps:52 80.17 842 32.89 2e-112 Probable cleavage and polyadenylation specificity factor subunit 2 OS Caenorhabditis briggsae GN cpsf-2 PE 3 SV 2

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 9 254 246 G3DSA:3.60.15.10 none none IPR001279
Pfam 655 738 84 PF13299 none Cleavage and polyadenylation factor 2 C-terminal IPR025069
SMART 243 366 124 SM01027 none Beta-Casp domain IPR022712
PANTHER 514 741 228 PTHR11203:SF5 none none IPR027075
PANTHER 1 366 366 PTHR11203:SF5 none none IPR027075
SUPERFAMILY 5 376 372 SSF56281 none none IPR001279
SUPERFAMILY 466 604 139 SSF56281 none none IPR001279
Pfam 20 157 138 PF00753 none Metallo-beta-lactamase superfamily IPR001279
Pfam 243 359 117 PF10996 none Beta-Casp domain IPR022712
Pfam 536 575 40 PF07521 none RNA-metabolising metallo-beta-lactamase IPR011108
PANTHER 514 741 228 PTHR11203 none none none
PANTHER 1 366 366 PTHR11203 none none none
Coils 393 414 22 Coil none none none

0 Localization

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2003_QTL13_peak_Bud_burst_A4 Qrob_Chr09 9 s_1AP8MN_635 s_1A3QQ_692 18,18 10,88 25,88 lod 3,4 7,2
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran2_2002_QTL12_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 4,33 33,33 lod 6,5 9,1
Bourran2_2014_nEpis_A4 Qrob_Chr09 9 v_AQ16YP22_198 s_1BM1HR_1387 18,91 18,91 43,71 lod 2,6242 5,9

0 Targeting