Protein : Qrob_P0152700.2 Q. robur
Protein Identifier  ? Qrob_P0152700.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=4) PF05055 - Protein of unknown function (DUF677) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 361  
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Protein Sequence Displayer

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0 Synonyms

0 GO Terms

19 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_015222 18 358 + 341 Gaps:6 58.52 593 68.88 7e-159 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1583000 21 358 + 338 Gaps:9 93.78 370 64.84 2e-151 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10006929mg 27 358 + 332 Gaps:9 90.00 370 67.27 6e-147 hypothetical protein
blastp_kegg lcl|cit:102612623 27 358 + 332 Gaps:9 90.00 370 67.27 6e-147 UPF0496 protein At3g49070-like
blastp_kegg lcl|pper:PRUPE_ppa008472mg 28 358 + 331 Gaps:15 97.58 330 68.94 2e-145 hypothetical protein
blastp_kegg lcl|vvi:100244074 18 358 + 341 Gaps:18 86.58 380 66.87 2e-144 UPF0496 protein At3g49070-like
blastp_kegg lcl|pmum:103333178 25 358 + 334 Gaps:15 91.81 354 68.31 2e-141 UPF0496 protein At3g49070
blastp_kegg lcl|gmx:100785927 20 355 + 336 Gaps:3 93.58 358 60.00 5e-136 UPF0496 protein At3g49070-like
blastp_kegg lcl|fve:101309306 25 358 + 334 Gaps:15 90.19 367 63.44 2e-134 UPF0496 protein At3g49070-like
blastp_kegg lcl|sot:102604314 29 360 + 332 Gaps:11 98.28 349 60.35 8e-134 UPF0496 protein At3g49070-like
blastp_uniprot_sprot sp|Q9SMU4|U496N_ARATH 29 358 + 330 Gaps:16 80.77 416 52.38 2e-96 UPF0496 protein At3g49070 OS Arabidopsis thaliana GN At3g49070 PE 2 SV 1
blastp_uniprot_sprot sp|A2XCJ1|U496C_ORYSI 27 352 + 326 Gaps:29 90.21 378 43.40 3e-75 UPF0496 protein 3 OS Oryza sativa subsp. indica GN OsI_009784 PE 3 SV 2
blastp_uniprot_sprot sp|Q10RR9|U496C_ORYSJ 27 352 + 326 Gaps:29 90.21 378 43.11 6e-74 UPF0496 protein 3 OS Oryza sativa subsp. japonica GN Os03g0148000 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LT84|U496M_ARATH 17 358 + 342 Gaps:25 89.79 382 30.03 2e-32 UPF0496 protein At3g19330 OS Arabidopsis thaliana GN At3g19330 PE 2 SV 2
blastp_uniprot_sprot sp|Q6DYE5|U496K_ARATH 27 355 + 329 Gaps:41 90.77 390 31.92 8e-30 UPF0496 protein At1g20180 OS Arabidopsis thaliana GN At1g20180 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LJK4|U496L_ARATH 27 355 + 329 Gaps:31 90.00 360 29.32 6e-28 UPF0496 protein At3g19250 OS Arabidopsis thaliana GN At3g19250 PE 2 SV 1
blastp_uniprot_sprot sp|A2YH25|U496B_ORYSI 249 355 + 107 Gaps:1 25.98 408 45.28 3e-19 Putative UPF0496 protein 2 OS Oryza sativa subsp. indica GN OsI_023618 PE 3 SV 2
blastp_uniprot_sprot sp|Q5Z8N6|U496B_ORYSJ 249 358 + 110 Gaps:4 27.45 408 44.64 5e-19 Putative UPF0496 protein 2 OS Oryza sativa subsp. japonica GN Os06g0718300 PE 3 SV 1
rpsblast_cdd gnl|CDD|113812 67 355 + 289 Gaps:28 93.15 336 24.28 2e-14 pfam05055 DUF677 Protein of unknown function (DUF677). This family consists of AT14A like proteins from Arabidopsis thaliana. At14a has a small domain that has sequence similarities to integrins from fungi insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and localises partly to the plasma membrane.

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 66 355 290 PF05055 none Protein of unknown function (DUF677) IPR007749
Coils 190 211 22 Coil none none none
Phobius 1 214 214 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 249 360 112 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 28 355 328 PTHR31113 none none none
Coils 277 298 22 Coil none none none
PANTHER 28 355 328 PTHR31113:SF2 none none none
Phobius 215 248 34 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

1 Localization

Analysis Start End Length
TMHMM 216 238 22

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2003_QTL13_peak_Bud_burst_A4 Qrob_Chr09 9 s_1AP8MN_635 s_1A3QQ_692 18,18 10,88 25,88 lod 3,4 7,2
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran2_2002_QTL12_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 4,33 33,33 lod 6,5 9,1
Bourran2_2014_nEpis_A4 Qrob_Chr09 9 v_AQ16YP22_198 s_1BM1HR_1387 18,91 18,91 43,71 lod 2,6242 5,9

0 Targeting