Protein : Qrob_P0152530.2 Q. robur
Protein Identifier  ? Qrob_P0152530.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) PTHR31636:SF4 - SCARECROW-LIKE PROTEIN 8 (PTHR31636:SF4) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 571  
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Sequence Feature Displayer

Protein Sequence Displayer

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0 Synonyms

0 GO Terms

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_015228 6 570 + 565 Gaps:39 89.81 628 64.01 0.0 Scarecrow-like protein 8 putative
blastp_kegg lcl|rcu:RCOM_1582830 24 570 + 547 Gaps:52 85.37 615 66.10 0.0 DELLA protein GAI putative
blastp_kegg lcl|cit:102611148 20 570 + 551 Gaps:59 85.89 659 60.25 0.0 scarecrow-like protein 8-like
blastp_kegg lcl|mdm:103443044 6 570 + 565 Gaps:42 87.64 647 60.49 0.0 scarecrow-like protein 8
blastp_kegg lcl|cic:CICLE_v10004502mg 20 570 + 551 Gaps:59 85.89 659 60.07 0.0 hypothetical protein
blastp_kegg lcl|pmum:103333736 24 570 + 547 Gaps:42 84.32 644 63.35 0.0 scarecrow-like protein 8
blastp_kegg lcl|pxb:103966125 6 570 + 565 Gaps:45 87.54 642 59.79 0.0 scarecrow-like protein 8
blastp_kegg lcl|pper:PRUPE_ppa002688mg 24 570 + 547 Gaps:45 84.34 645 63.05 0.0 hypothetical protein
blastp_kegg lcl|fve:101310065 6 570 + 565 Gaps:41 88.32 659 57.39 0.0 scarecrow-like protein 8-like
blastp_kegg lcl|mdm:103439806 6 570 + 565 Gaps:50 87.58 652 59.72 0.0 scarecrow-like protein 8
blastp_uniprot_sprot sp|Q9FYR7|SCL8_ARATH 18 570 + 553 Gaps:49 85.94 640 54.73 2e-170 Scarecrow-like protein 8 OS Arabidopsis thaliana GN SCL8 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SDQ3|SCL1_ARATH 89 570 + 482 Gaps:50 79.60 593 38.77 5e-83 Scarecrow-like protein 1 OS Arabidopsis thaliana GN SCL1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LDL7|PAT1_ARATH 199 570 + 372 Gaps:32 75.10 490 41.58 2e-74 Scarecrow-like transcription factor PAT1 OS Arabidopsis thaliana GN PAT1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GVE1|CIGR2_ORYSJ 196 570 + 375 Gaps:23 68.01 544 39.46 3e-69 Chitin-inducible gibberellin-responsive protein 2 OS Oryza sativa subsp. japonica GN CIGR2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9S7H5|SCL21_ARATH 196 570 + 375 Gaps:24 87.89 413 40.50 6e-69 Scarecrow-like protein 21 OS Arabidopsis thaliana GN SCL21 PE 1 SV 1
blastp_uniprot_sprot sp|Q69VG1|CIGR1_ORYSJ 117 570 + 454 Gaps:47 80.39 571 34.64 3e-68 Chitin-inducible gibberellin-responsive protein 1 OS Oryza sativa subsp. japonica GN CIGR1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9M0M5|SCL13_ARATH 196 570 + 375 Gaps:29 69.94 529 37.03 4e-67 Scarecrow-like protein 13 OS Arabidopsis thaliana GN SCL13 PE 2 SV 2
blastp_uniprot_sprot sp|Q8H125|SCL5_ARATH 196 570 + 375 Gaps:31 61.98 597 38.38 8e-63 Scarecrow-like protein 5 OS Arabidopsis thaliana GN SCL5 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GXW1|RGL2_ARATH 271 570 + 300 Gaps:20 52.65 547 37.50 7e-43 DELLA protein RGL2 OS Arabidopsis thaliana GN RGL2 PE 1 SV 2
blastp_uniprot_sprot sp|Q9C8Y3|RGL1_ARATH 271 570 + 300 Gaps:31 54.99 511 39.50 1e-42 DELLA protein RGL1 OS Arabidopsis thaliana GN RGL1 PE 1 SV 1
rpsblast_cdd gnl|CDD|202673 196 570 + 375 Gaps:26 99.73 372 42.86 1e-99 pfam03514 GRAS GRAS family transcription factor. Sequence analysis of the products of the GRAS (GAI RGA SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect loss of a ground tissue layer in the root. The PAT1 protein is involved in phytochrome A signal transduction.

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 6 570 565 PTHR31636:SF4 none none IPR030013
ProSiteProfiles 169 552 384 PS50985 none GRAS family profile. IPR005202
PANTHER 6 570 565 PTHR31636 none none none
Pfam 197 570 374 PF03514 none GRAS domain family IPR005202

0 Localization

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2003_QTL13_peak_Bud_burst_A4 Qrob_Chr09 9 s_1AP8MN_635 s_1A3QQ_692 18,18 10,88 25,88 lod 3,4 7,2
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran2_2002_QTL12_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 4,33 33,33 lod 6,5 9,1
Bourran2_2014_nEpis_A4 Qrob_Chr09 9 v_AQ16YP22_198 s_1BM1HR_1387 18,91 18,91 43,71 lod 2,6242 5,9

0 Targeting