Protein : Qrob_P0152260.2 Q. robur
Protein Identifier  ? Qrob_P0152260.2 Organism . Name  Quercus robur
Score  91.0 Score Type  egn
Protein Description  (M=1) K03143 - transcription initiation factor TFIIH subunit 3 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 228  
Kegg Orthology  K03143
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0006289 nucleotide-excision repair A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts).
GO:0000439 core TFIIH complex The 7 subunit core of TFIIH that is a part of either the general transcription factor holo-TFIIH or the nucleotide-excision repair factor 3 complex. In S. cerevisiae/humans the complex is composed of: Ssl2/XPB, Tfb1/p62, Tfb2/p52, Ssl1/p44, Tfb4/p34, Tfb5/p8 and Rad3/XPD.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103319842 1 224 + 224 Gaps:18 72.97 296 78.24 8e-101 general transcription factor IIH subunit 3
blastp_kegg lcl|fve:101302718 1 224 + 224 Gaps:18 72.00 300 74.54 1e-99 general transcription factor IIH subunit 3-like isoform 1
blastp_kegg lcl|vvi:100253978 1 223 + 223 Gaps:19 72.73 297 75.93 2e-99 general transcription factor IIH subunit 3-like
blastp_kegg lcl|rcu:RCOM_0417820 1 222 + 222 Gaps:17 80.83 266 74.42 8e-98 RNA polymerase II transcription factor B subunit putative
blastp_kegg lcl|pper:PRUPE_ppa009386mg 1 224 + 224 Gaps:19 72.88 295 78.14 1e-97 hypothetical protein
blastp_kegg lcl|csv:101212755 1 223 + 223 Gaps:18 72.88 295 75.81 2e-97 general transcription factor IIH subunit 3-like
blastp_kegg lcl|cmo:103485913 1 224 + 224 Gaps:18 73.22 295 75.00 3e-96 general transcription factor IIH subunit 3
blastp_kegg lcl|mtr:MTR_3g072430 3 224 + 222 Gaps:17 63.24 340 67.91 1e-92 General transcription factor IIH subunit
blastp_kegg lcl|pxb:103953166 1 224 + 224 Gaps:19 73.06 297 76.96 6e-92 general transcription factor IIH subunit 3
blastp_kegg lcl|cit:102625253 1 222 + 222 Gaps:18 71.81 298 71.96 5e-90 general transcription factor IIH subunit 3-like
blastp_uniprot_sprot sp|Q561R7|TF2H3_RAT 11 222 + 212 Gaps:43 72.17 309 32.29 9e-21 General transcription factor IIH subunit 3 OS Rattus norvegicus GN Gtf2h3 PE 2 SV 1
blastp_uniprot_sprot sp|Q05B56|TF2H3_BOVIN 11 222 + 212 Gaps:43 72.17 309 32.29 2e-20 General transcription factor IIH subunit 3 OS Bos taurus GN GTF2H3 PE 2 SV 1
blastp_uniprot_sprot sp|Q8VD76|TF2H3_MOUSE 11 222 + 212 Gaps:49 72.17 309 33.63 4e-20 General transcription factor IIH subunit 3 OS Mus musculus GN Gtf2h3 PE 1 SV 1
blastp_uniprot_sprot sp|Q13889|TF2H3_HUMAN 11 222 + 212 Gaps:48 72.08 308 32.88 8e-20 General transcription factor IIH subunit 3 OS Homo sapiens GN GTF2H3 PE 1 SV 2
blastp_uniprot_sprot sp|O74366|TFB4_SCHPO 11 222 + 212 Gaps:18 68.69 297 33.82 7e-19 RNA polymerase II transcription factor B subunit 4 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN tfb4 PE 1 SV 1
blastp_uniprot_sprot sp|Q86IB5|TF2H3_DICDI 32 221 + 190 Gaps:36 51.61 372 33.85 1e-17 General transcription factor IIH subunit 3 OS Dictyostelium discoideum GN gtf2h3 PE 3 SV 1
blastp_uniprot_sprot sp|Q12004|TFB4_YEAST 14 225 + 212 Gaps:16 67.46 338 29.39 5e-17 RNA polymerase II transcription factor B subunit 4 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN TFB4 PE 1 SV 1
blastp_uniprot_sprot sp|Q6FWA7|TFB4_CANGA 14 225 + 212 Gaps:17 67.16 335 32.00 2e-16 RNA polymerase II transcription factor B subunit 4 OS Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN TFB4 PE 3 SV 1
blastp_uniprot_sprot sp|Q75B93|TFB4_ASHGO 3 225 + 223 Gaps:17 70.38 341 29.58 5e-15 RNA polymerase II transcription factor B subunit 4 OS Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN TFB4 PE 3 SV 1
blastp_uniprot_sprot sp|Q6CVX9|TFB4_KLULA 4 225 + 222 Gaps:40 70.03 337 30.51 2e-11 RNA polymerase II transcription factor B subunit 4 OS Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN TFB4 PE 3 SV 1
rpsblast_cdd gnl|CDD|202784 13 223 + 211 Gaps:17 78.52 270 40.57 4e-55 pfam03850 Tfb4 Transcription factor Tfb4. This family appears to be distantly related to the VWA domain.
rpsblast_cdd gnl|CDD|161965 14 222 + 209 Gaps:34 77.06 279 35.35 3e-22 TIGR00627 tfb4 transcription factor tfb4. All proteins in this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair.This family is based on the phylogenomic analysis of JA Eisen (1999 Ph.D. Thesis Stanford University).
rpsblast_cdd gnl|CDD|34839 11 222 + 212 Gaps:15 69.26 296 27.80 3e-19 COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH subunit TFB4 [Transcription / DNA replication recombination and repair].
rpsblast_kog gnl|CDD|37698 11 222 + 212 Gaps:27 68.47 314 33.95 4e-23 KOG2487 KOG2487 KOG2487 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH subunit TFB4 [Transcription Replication recombination and repair].

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 223 223 PTHR12831:SF0 none none none
Phobius 1 127 127 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 1 223 223 PTHR12831 none none IPR004600
Pfam 13 224 212 PF03850 none Transcription factor Tfb4 IPR004600
Phobius 150 227 78 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 128 149 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

1 Localization

Analysis Start End Length
TMHMM 127 149 22

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 153   Secretory pathway 1 0.961 0.037 NON-PLANT 153