Protein : Qrob_P0147450.2 Q. robur
Protein Identifier  ? Qrob_P0147450.2 Organism . Name  Quercus robur
Score  97.2 Score Type  egn
Protein Description  (M=34) K05391 - cyclic nucleotide gated channel, other eukaryote Gene Prediction Quality  validated
Protein length 

Sequence

Length: 722  
Kegg Orthology  K05391
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0005216 ion channel activity Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
GO:0006811 ion transport The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103332242 1 691 + 691 Gaps:39 92.65 721 65.12 0.0 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|pper:PRUPE_ppa002071mg 1 720 + 720 Gaps:60 99.58 721 62.26 0.0 hypothetical protein
blastp_kegg lcl|pxb:103929332 1 691 + 691 Gaps:50 92.77 719 63.57 0.0 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|pper:PRUPE_ppa026143mg 1 691 + 691 Gaps:57 92.83 739 62.68 0.0 hypothetical protein
blastp_kegg lcl|mdm:103414450 1 691 + 691 Gaps:40 92.79 721 62.63 0.0 cyclic nucleotide-gated ion channel 1
blastp_kegg lcl|fve:101292339 1 691 + 691 Gaps:48 92.77 719 62.97 0.0 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|pop:POPTR_0014s09350g 7 717 + 711 Gaps:58 98.34 723 58.23 0.0 POPTRDRAFT_1098575 hypothetical protein
blastp_kegg lcl|pmum:103332244 1 720 + 720 Gaps:60 99.58 721 60.86 0.0 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|cic:CICLE_v10019048mg 1 721 + 721 Gaps:73 100.00 722 59.14 0.0 hypothetical protein
blastp_kegg lcl|cit:102618760 1 721 + 721 Gaps:73 100.00 722 59.14 0.0 cyclic nucleotide-gated ion channel 1-like
blastp_pdb 1wgp_A 493 611 + 119 Gaps:5 90.51 137 58.87 7e-40 mol:protein length:137 Probable cyclic nucleotide-gated ion channel
blastp_pdb 3u0z_B 432 564 + 133 Gaps:2 62.38 210 29.77 4e-11 mol:protein length:210 Potassium/sodium hyperpolarization-activated
blastp_pdb 3u0z_A 432 564 + 133 Gaps:2 62.38 210 29.77 4e-11 mol:protein length:210 Potassium/sodium hyperpolarization-activated
blastp_pdb 3ffq_B 432 564 + 133 Gaps:2 64.85 202 29.77 9e-11 mol:protein length:202 Potassium/sodium hyperpolarization-activated
blastp_pdb 3ffq_A 432 564 + 133 Gaps:2 64.85 202 29.77 9e-11 mol:protein length:202 Potassium/sodium hyperpolarization-activated
blastp_pdb 3u10_A 432 564 + 133 Gaps:2 62.38 210 29.77 9e-11 mol:protein length:210 Potassium/sodium hyperpolarization-activated
blastp_pdb 1q5o_A 432 564 + 133 Gaps:2 63.29 207 29.77 1e-10 mol:protein length:207 Potassium/sodium hyperpolarization-activated
blastp_pdb 1q43_B 432 564 + 133 Gaps:2 63.29 207 29.77 1e-10 mol:protein length:207 Potassium/sodium hyperpolarization-activated
blastp_pdb 1q43_A 432 564 + 133 Gaps:2 63.29 207 29.77 1e-10 mol:protein length:207 Potassium/sodium hyperpolarization-activated
blastp_pdb 1q3e_B 432 564 + 133 Gaps:2 63.29 207 29.77 1e-10 mol:protein length:207 Potassium/sodium hyperpolarization-activated
blastp_uniprot_sprot sp|O65717|CNGC1_ARATH 1 721 + 721 Gaps:71 100.00 716 58.38 0.0 Cyclic nucleotide-gated ion channel 1 OS Arabidopsis thaliana GN CNGC1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LNJ0|CNG10_ARATH 10 720 + 711 Gaps:94 98.03 711 57.53 0.0 Probable cyclic nucleotide-gated ion channel 10 OS Arabidopsis thaliana GN CNGC10 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LD40|CNG13_ARATH 10 718 + 709 Gaps:76 98.13 696 57.25 0.0 Putative cyclic nucleotide-gated ion channel 13 OS Arabidopsis thaliana GN CNGC13 PE 3 SV 2
blastp_uniprot_sprot sp|Q9SKD7|CNGC3_ARATH 1 721 + 721 Gaps:83 99.72 706 54.12 0.0 Probable cyclic nucleotide-gated ion channel 3 OS Arabidopsis thaliana GN CNGC3 PE 2 SV 2
blastp_uniprot_sprot sp|Q9M0A4|CNGC9_ARATH 50 721 + 672 Gaps:61 90.72 733 51.73 0.0 Putative cyclic nucleotide-gated ion channel 9 OS Arabidopsis thaliana GN CNGC9 PE 1 SV 1
blastp_uniprot_sprot sp|O82226|CNGC6_ARATH 50 721 + 672 Gaps:72 91.03 747 50.15 0.0 Probable cyclic nucleotide-gated ion channel 6 OS Arabidopsis thaliana GN CNGC6 PE 1 SV 2
blastp_uniprot_sprot sp|Q8RWS9|CNGC5_ARATH 1 720 + 720 Gaps:69 100.00 717 49.37 0.0 Probable cyclic nucleotide-gated ion channel 5 OS Arabidopsis thaliana GN CNGC5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FXH6|CNGC8_ARATH 1 669 + 669 Gaps:58 87.25 753 49.47 0.0 Putative cyclic nucleotide-gated ion channel 8 OS Arabidopsis thaliana GN CNGC8 PE 3 SV 2
blastp_uniprot_sprot sp|Q9S9N5|CNGC7_ARATH 1 668 + 668 Gaps:78 88.08 738 50.62 0.0 Putative cyclic nucleotide-gated ion channel 7 OS Arabidopsis thaliana GN CNGC7 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SJA4|CNG14_ARATH 86 721 + 636 Gaps:95 90.22 726 47.48 0.0 Probable cyclic nucleotide-gated ion channel 14 OS Arabidopsis thaliana GN CNGC14 PE 2 SV 2

31 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 498 624 127 SM00100 none Cyclic nucleotide-monophosphate binding domain IPR000595
PANTHER 347 622 276 PTHR10217:SF465 none none none
PANTHER 644 687 44 PTHR10217:SF465 none none none
PANTHER 1 296 296 PTHR10217:SF465 none none none
Gene3D 496 609 114 G3DSA:2.60.120.10 none none IPR014710
SUPERFAMILY 360 420 61 SSF81324 none none none
SUPERFAMILY 88 292 205 SSF81324 none none none
Phobius 620 640 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 219 261 43 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 100 121 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 523 609 87 PF00027 none Cyclic nucleotide-binding domain IPR000595
Phobius 416 619 204 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 427 616 190 SSF51206 none none IPR018490
Phobius 122 141 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 430 489 60 G3DSA:1.10.287.630 none none none
Phobius 1 99 99 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 197 218 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 149 415 267 PF00520 none Ion transport protein IPR005821
ProSiteProfiles 498 623 126 PS50042 none cAMP/cGMP binding motif profile. IPR000595
Phobius 142 163 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 394 415 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 96 291 196 G3DSA:1.10.287.70 none none none
Gene3D 360 420 61 G3DSA:1.10.287.70 none none none
ProSiteProfiles 650 679 30 PS50096 none IQ motif profile. IPR000048
Phobius 164 196 33 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 641 721 81 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 262 287 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 347 622 276 PTHR10217 none none none
PANTHER 644 687 44 PTHR10217 none none none
PANTHER 1 296 296 PTHR10217 none none none

6 Localization

Analysis Start End Length
TMHMM 196 218 22
TMHMM 100 121 21
TMHMM 142 164 22
TMHMM 267 289 22
TMHMM 390 412 22
TMHMM 620 642 22

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 44   Mitochondrion 4 0.027 0.715 NON-PLANT 44