Protein : Qrob_P0147200.2 Q. robur
Protein Identifier  ? Qrob_P0147200.2 Organism . Name  Quercus robur
Score  72.0 Score Type  egn
Protein Description  (M=2) K12198 - charged multivesicular body protein 5 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 190  
Kegg Orthology  K12198
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0007034 vacuolar transport The directed movement of substances into, out of or within a vacuole.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103967647 55 189 + 135 Gaps:2 57.81 237 86.86 1e-75 charged multivesicular body protein 5-like
blastp_kegg lcl|pmum:103319307 55 189 + 135 Gaps:2 57.81 237 86.13 4e-75 charged multivesicular body protein 5-like
blastp_kegg lcl|pper:PRUPE_ppa010749mg 55 189 + 135 Gaps:2 57.81 237 86.13 4e-75 hypothetical protein
blastp_kegg lcl|mtr:MTR_070s0007 55 189 + 135 none 57.45 235 85.19 1e-74 Charged multivesicular body protein
blastp_kegg lcl|mtr:MTR_1g090490 55 189 + 135 none 57.45 235 85.19 1e-74 Charged multivesicular body protein
blastp_kegg lcl|mdm:103441810 55 189 + 135 Gaps:2 57.81 237 85.40 2e-74 charged multivesicular body protein 5-like
blastp_kegg lcl|cmo:103501350 60 189 + 130 Gaps:2 100.00 132 87.12 7e-74 charged multivesicular body protein 5-like
blastp_kegg lcl|rcu:RCOM_1305670 55 189 + 135 Gaps:2 57.81 237 84.67 8e-74 Charged multivesicular body protein putative
blastp_kegg lcl|cmo:103489370 55 189 + 135 Gaps:2 57.81 237 83.94 9e-74 charged multivesicular body protein 5
blastp_kegg lcl|pxb:103952533 55 189 + 135 Gaps:2 57.81 237 84.67 1e-73 charged multivesicular body protein 5-like
blastp_uniprot_sprot sp|Q54JK4|CHMP5_DICDI 60 186 + 127 Gaps:26 49.77 215 48.60 1e-17 Charged multivesicular body protein 5 OS Dictyostelium discoideum GN chmp5 PE 3 SV 1
blastp_uniprot_sprot sp|Q4QQV8|CHMP5_RAT 60 183 + 124 Gaps:16 51.14 219 45.54 1e-15 Charged multivesicular body protein 5 OS Rattus norvegicus GN Chmp5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9D7S9|CHMP5_MOUSE 60 183 + 124 Gaps:16 51.14 219 45.54 1e-15 Charged multivesicular body protein 5 OS Mus musculus GN Chmp5 PE 2 SV 1
blastp_uniprot_sprot sp|Q5RBR3|CHMP5_PONAB 60 183 + 124 Gaps:16 51.14 219 44.64 6e-15 Charged multivesicular body protein 5 OS Pongo abelii GN CHMP5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9NZZ3|CHMP5_HUMAN 60 183 + 124 Gaps:16 51.14 219 44.64 6e-15 Charged multivesicular body protein 5 OS Homo sapiens GN CHMP5 PE 1 SV 1
blastp_uniprot_sprot sp|Q9VVI9|CHMP5_DROME 60 183 + 124 Gaps:15 50.88 226 40.87 8e-15 Charged multivesicular body protein 5 OS Drosophila melanogaster GN CG6259 PE 1 SV 2
blastp_uniprot_sprot sp|Q6DD52|CHMP5_XENLA 62 183 + 122 Gaps:16 50.23 219 43.64 1e-11 Charged multivesicular body protein 5 OS Xenopus laevis GN chmp5 PE 2 SV 1
blastp_uniprot_sprot sp|Q5FW29|CHMP5_XENTR 62 183 + 122 Gaps:16 50.23 219 43.64 1e-11 Charged multivesicular body protein 5 OS Xenopus tropicalis GN chmp5 PE 2 SV 1
blastp_uniprot_sprot sp|Q7T339|CHMP5_DANRE 60 183 + 124 Gaps:11 51.36 220 40.71 6e-11 Charged multivesicular body protein 5 OS Danio rerio GN chmp5 PE 2 SV 1
blastp_uniprot_sprot sp|Q8IL52|YSNF1_PLAF7 18 143 + 126 Gaps:21 52.84 229 34.71 4e-08 Uncharacterized protein PF14_0397 OS Plasmodium falciparum (isolate 3D7) GN PF14_0397 PE 3 SV 2
rpsblast_cdd gnl|CDD|185643 60 140 + 81 Gaps:2 37.44 211 53.16 3e-22 PTZ00464 PTZ00464 SNF-7-like protein Provisional.
rpsblast_cdd gnl|CDD|146145 60 161 + 102 Gaps:17 50.30 169 40.00 1e-17 pfam03357 Snf7 Snf7. This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins such as activated cell surface receptors to the lumen of the vacuole/lysosome either for degradation/downregulation or in the case of hydrolases for proper localisation requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family.
rpsblast_kog gnl|CDD|36868 55 168 + 114 Gaps:6 54.13 218 45.76 4e-27 KOG1655 KOG1655 KOG1655 Protein involved in vacuolar protein sorting [Intracellular trafficking secretion and vesicular transport].
rpsblast_kog gnl|CDD|36869 58 176 + 119 Gaps:11 49.77 221 33.64 8e-09 KOG1656 KOG1656 KOG1656 Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking secretion and vesicular transport].

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 55 184 130 PTHR22761:SF12 none none none
Pfam 56 161 106 PF03357 none Snf7 IPR005024
Coils 82 103 22 Coil none none none
PANTHER 55 184 130 PTHR22761 none none none

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

0 Targeting