Protein : Qrob_P0147190.2 Q. robur
Protein Identifier  ? Qrob_P0147190.2 Organism . Name  Quercus robur
Score  92.0 Score Type  egn
Protein Description  (M=2) K12198 - charged multivesicular body protein 5 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 119  
Kegg Orthology  K12198
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Protein Sequence Displayer

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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0007034 vacuolar transport The directed movement of substances into, out of or within a vacuole.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103967647 1 105 + 105 none 44.30 237 95.24 2e-65 charged multivesicular body protein 5-like
blastp_kegg lcl|mdm:103431743 1 105 + 105 none 44.30 237 94.29 4e-65 charged multivesicular body protein 5-like
blastp_kegg lcl|csv:101207637 1 109 + 109 none 45.99 237 92.66 4e-65 charged multivesicular body protein 5-like
blastp_kegg lcl|cmo:103489370 1 109 + 109 none 45.99 237 92.66 5e-65 charged multivesicular body protein 5
blastp_kegg lcl|mdm:103441810 1 105 + 105 none 44.30 237 94.29 2e-64 charged multivesicular body protein 5-like
blastp_kegg lcl|tcc:TCM_044333 1 109 + 109 none 46.19 236 89.91 2e-64 SNF7 family protein
blastp_kegg lcl|fve:101293038 1 105 + 105 none 44.30 237 94.29 2e-64 charged multivesicular body protein 5-like
blastp_kegg lcl|vvi:100244534 1 109 + 109 none 45.99 237 89.91 3e-64 charged multivesicular body protein 5-like
blastp_kegg lcl|pxb:103952533 1 105 + 105 none 44.30 237 92.38 4e-64 charged multivesicular body protein 5-like
blastp_kegg lcl|pop:POPTR_0008s01920g 1 109 + 109 none 46.19 236 89.91 1e-63 POPTRDRAFT_832471 SNF7 family protein
blastp_uniprot_sprot sp|Q7T339|CHMP5_DANRE 1 105 + 105 none 47.73 220 52.38 5e-32 Charged multivesicular body protein 5 OS Danio rerio GN chmp5 PE 2 SV 1
blastp_uniprot_sprot sp|Q5RBR3|CHMP5_PONAB 1 105 + 105 none 47.95 219 52.38 7e-32 Charged multivesicular body protein 5 OS Pongo abelii GN CHMP5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9NZZ3|CHMP5_HUMAN 1 105 + 105 none 47.95 219 52.38 7e-32 Charged multivesicular body protein 5 OS Homo sapiens GN CHMP5 PE 1 SV 1
blastp_uniprot_sprot sp|Q4QQV8|CHMP5_RAT 1 105 + 105 none 47.95 219 52.38 2e-31 Charged multivesicular body protein 5 OS Rattus norvegicus GN Chmp5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9D7S9|CHMP5_MOUSE 1 105 + 105 none 47.95 219 52.38 2e-31 Charged multivesicular body protein 5 OS Mus musculus GN Chmp5 PE 2 SV 1
blastp_uniprot_sprot sp|Q5FW29|CHMP5_XENTR 1 105 + 105 none 47.95 219 49.52 5e-30 Charged multivesicular body protein 5 OS Xenopus tropicalis GN chmp5 PE 2 SV 1
blastp_uniprot_sprot sp|Q6DD52|CHMP5_XENLA 1 105 + 105 none 47.95 219 48.57 2e-29 Charged multivesicular body protein 5 OS Xenopus laevis GN chmp5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9VVI9|CHMP5_DROME 1 111 + 111 none 49.12 226 45.95 6e-28 Charged multivesicular body protein 5 OS Drosophila melanogaster GN CG6259 PE 1 SV 2
blastp_uniprot_sprot sp|Q54JK4|CHMP5_DICDI 1 105 + 105 Gaps:1 48.37 215 50.00 1e-27 Charged multivesicular body protein 5 OS Dictyostelium discoideum GN chmp5 PE 3 SV 1
blastp_uniprot_sprot sp|O74422|YQ56_SCHPO 1 105 + 105 none 50.00 210 43.81 2e-23 Uncharacterized protein C162.06c OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPCC162.06c PE 3 SV 1
rpsblast_cdd gnl|CDD|185643 1 105 + 105 Gaps:2 48.82 211 49.51 2e-28 PTZ00464 PTZ00464 SNF-7-like protein Provisional.
rpsblast_cdd gnl|CDD|146145 12 105 + 94 Gaps:11 49.11 169 36.14 2e-13 pfam03357 Snf7 Snf7. This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins such as activated cell surface receptors to the lumen of the vacuole/lysosome either for degradation/downregulation or in the case of hydrolases for proper localisation requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family.
rpsblast_kog gnl|CDD|36868 1 105 + 105 none 48.17 218 60.00 1e-36 KOG1655 KOG1655 KOG1655 Protein involved in vacuolar protein sorting [Intracellular trafficking secretion and vesicular transport].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 105 105 PTHR22761:SF12 none none none
Pfam 12 107 96 PF03357 none Snf7 IPR005024
PANTHER 1 105 105 PTHR22761 none none none

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

0 Targeting