Protein : Qrob_P0146590.2 Q. robur
Protein Identifier  ? Qrob_P0146590.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K03137 - transcription initiation factor TFIIE subunit beta Gene Prediction Quality  validated
Protein length 

Sequence

Length: 283  
Kegg Orthology  K03137
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0006367 transcription initiation from RNA polymerase II promoter Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription.

17 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0001s09040g 1 278 + 278 Gaps:4 99.30 284 80.85 2e-158 POPTRDRAFT_640520 transcription initiation factor-related family protein
blastp_kegg lcl|csv:101231892 1 277 + 277 Gaps:4 100.00 277 80.51 2e-153 general transcription factor IIE subunit 2-like
blastp_kegg lcl|csv:101211845 1 277 + 277 Gaps:4 100.00 277 80.51 2e-153 general transcription factor IIE subunit 2-like
blastp_kegg lcl|tcc:TCM_016212 1 278 + 278 Gaps:5 98.94 284 75.80 1e-152 Transcription initiation factor IIE subunit beta
blastp_kegg lcl|cmo:103493148 1 277 + 277 Gaps:4 100.00 277 80.51 6e-152 general transcription factor IIE subunit 2-like
blastp_kegg lcl|vvi:100259920 1 278 + 278 Gaps:4 97.54 285 80.22 3e-147 general transcription factor IIE subunit 2-like
blastp_kegg lcl|cic:CICLE_v10021533mg 1 279 + 279 Gaps:4 99.29 283 78.65 1e-145 hypothetical protein
blastp_kegg lcl|cit:102622567 1 279 + 279 Gaps:4 99.29 283 78.65 1e-145 general transcription factor IIE subunit 2-like
blastp_kegg lcl|pda:103712778 1 279 + 279 Gaps:6 98.61 287 71.73 1e-144 transcription initiation factor IIE subunit beta
blastp_kegg lcl|mtr:MTR_5g010620 1 279 + 279 Gaps:11 99.26 270 80.60 3e-143 General transcription factor IIE subunit
blastp_uniprot_sprot sp|Q54KJ8|T2EB_DICDI 10 271 + 262 Gaps:20 92.03 276 27.56 1e-15 General transcription factor IIE subunit 2 OS Dictyostelium discoideum GN gtf2e2 PE 3 SV 1
blastp_uniprot_sprot sp|P79011|T2EB_SCHPO 74 271 + 198 Gaps:14 68.07 285 29.38 5e-15 Transcription initiation factor IIE subunit beta OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN tfa2 PE 1 SV 2
blastp_uniprot_sprot sp|P29084|T2EB_HUMAN 93 276 + 184 Gaps:22 62.54 291 26.92 1e-06 Transcription initiation factor IIE subunit beta OS Homo sapiens GN GTF2E2 PE 1 SV 1
blastp_uniprot_sprot sp|Q2KJF9|T2EB_BOVIN 93 276 + 184 Gaps:22 62.98 289 26.37 5e-06 General transcription factor IIE subunit 2 OS Bos taurus GN GTF2E2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9D902|T2EB_MOUSE 93 276 + 184 Gaps:22 62.33 292 26.37 5e-06 General transcription factor IIE subunit 2 OS Mus musculus GN Gtf2e2 PE 2 SV 2
rpsblast_cdd gnl|CDD|34773 11 276 + 266 Gaps:21 90.18 285 20.62 9e-13 COG5174 TFA2 Transcription initiation factor IIE beta subunit [Transcription].
rpsblast_kog gnl|CDD|38305 1 281 + 281 Gaps:9 99.30 284 33.33 6e-54 KOG3095 KOG3095 KOG3095 Transcription initiation factor IIE beta subunit [Transcription].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 60 135 76 PS51351 none TFIIE beta central core DNA-binding domain profile. IPR003166
PANTHER 1 276 276 PTHR12716:SF8 none none none
PANTHER 1 276 276 PTHR12716 none none none

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting