Protein : Qrob_P0144520.2 Q. robur

Protein Identifier  ? Qrob_P0144520.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) PTHR31062:SF16 - XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 29-RELATED (PTHR31062:SF16) Code Enzyme  EC:2.4.1.207
Gene Prediction Quality  validated Protein length 

Sequence

Length: 353  
Kegg Orthology  K08235

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0 Synonyms

8 GO Terms

Identifier Name Description
GO:0005618 cell wall The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
GO:0010411 xyloglucan metabolic process The chemical reactions and pathways involving xyloglucan, the cross-linking glycan composed of (1->4)-beta-D-glucan backbone substituted at regular intervals with beta-D-xylosyl-(1->6) residues, which is present in the primary cell wall of most higher plants.
GO:0006073 cellular glucan metabolic process The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues.
GO:0016762 xyloglucan:xyloglucosyl transferase activity Catalysis of the cleavage of a beta-(1->4) bond in the backbone of a xyloglucan and transfers the xyloglucanyl segment on to O-4 of the non-reducing terminal glucose residue of an acceptor, which can be a xyloglucan or an oligosaccharide of xyloglucan.
GO:0048046 apoplast The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it.
GO:0042546 cell wall biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cell wall. Includes biosynthesis of constituent macromolecules, such as proteins and polysaccharides, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa007685mg 28 340 + 313 Gaps:3 86.35 359 82.58 0.0 hypothetical protein
blastp_kegg lcl|mdm:103436866 1 349 + 349 Gaps:7 99.72 355 74.29 0.0 probable xyloglucan endotransglucosylase/hydrolase protein 30
blastp_kegg lcl|mdm:103403986 1 352 + 352 Gaps:5 100.00 355 73.52 0.0 probable xyloglucan endotransglucosylase/hydrolase protein 30
blastp_kegg lcl|pxb:103936029 1 331 + 331 Gaps:5 94.08 355 76.95 0.0 probable xyloglucan endotransglucosylase/hydrolase protein 30
blastp_kegg lcl|pxb:103940134 1 331 + 331 Gaps:5 94.08 355 76.95 0.0 probable xyloglucan endotransglucosylase/hydrolase protein 30
blastp_kegg lcl|pmum:103336833 21 340 + 320 Gaps:6 88.40 362 79.69 0.0 probable xyloglucan endotransglucosylase/hydrolase protein 30
blastp_kegg lcl|pxb:103962487 1 352 + 352 Gaps:14 100.00 364 71.43 0.0 probable xyloglucan endotransglucosylase/hydrolase protein 30
blastp_kegg lcl|rcu:RCOM_1316740 21 352 + 332 Gaps:4 96.00 350 74.40 0.0 Xyloglucan endotransglucosylase/hydrolase protein 2 precursor putative (EC:2.4.1.207)
blastp_kegg lcl|cmo:103503575 3 328 + 326 Gaps:2 93.68 348 75.46 3e-180 probable xyloglucan endotransglucosylase/hydrolase protein 30
blastp_kegg lcl|csv:101213730 3 348 + 346 Gaps:2 99.43 348 72.54 1e-179 XTH27 probable xyloglucan endotransglucosylase/hydrolase protein 30-like
blastp_pdb 2uwc_B 36 306 + 271 Gaps:19 95.94 271 43.46 3e-67 mol:protein length:271 CELLULASE
blastp_pdb 2uwc_A 36 306 + 271 Gaps:19 95.94 271 43.46 3e-67 mol:protein length:271 CELLULASE
blastp_pdb 2uwa_C 36 306 + 271 Gaps:19 94.89 274 43.08 8e-67 mol:protein length:274 CELLULASE
blastp_pdb 2uwa_B 36 306 + 271 Gaps:19 94.89 274 43.08 8e-67 mol:protein length:274 CELLULASE
blastp_pdb 2uwa_A 36 306 + 271 Gaps:19 94.89 274 43.08 8e-67 mol:protein length:274 CELLULASE
blastp_pdb 2uwb_B 36 306 + 271 Gaps:18 95.51 267 43.53 2e-66 mol:protein length:267 CELLULASE
blastp_pdb 2uwb_A 36 306 + 271 Gaps:18 95.51 267 43.53 2e-66 mol:protein length:267 CELLULASE
blastp_pdb 2vh9_B 36 306 + 271 Gaps:18 87.93 290 42.75 3e-66 mol:protein length:290 CELLULASE
blastp_pdb 2vh9_A 36 306 + 271 Gaps:18 87.93 290 42.75 3e-66 mol:protein length:290 CELLULASE
blastp_pdb 1un1_B 29 311 + 283 Gaps:12 98.92 278 38.55 3e-60 mol:protein length:278 XYLOGLUCAN ENDOTRANSGLYCOSYLASE
blastp_uniprot_sprot sp|Q38908|XTH30_ARATH 24 328 + 305 Gaps:6 89.50 343 70.03 3e-163 Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS Arabidopsis thaliana GN XTH30 PE 2 SV 2
blastp_uniprot_sprot sp|Q8L7H3|XTH29_ARATH 34 346 + 313 Gaps:12 91.04 357 62.77 9e-149 Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS Arabidopsis thaliana GN XTH29 PE 2 SV 1
blastp_uniprot_sprot sp|Q38909|XTH28_ARATH 19 348 + 330 Gaps:5 97.89 332 53.54 1e-127 Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS Arabidopsis thaliana GN XTH28 PE 2 SV 1
blastp_uniprot_sprot sp|Q8LDS2|XTH27_ARATH 16 341 + 326 Gaps:7 97.00 333 55.42 2e-125 Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS Arabidopsis thaliana GN XTH27 PE 2 SV 2
blastp_uniprot_sprot sp|Q8LC45|XTH33_ARATH 38 306 + 269 Gaps:9 87.74 310 43.75 2e-82 Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS Arabidopsis thaliana GN XTH33 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SV60|XTH2_ARATH 19 306 + 288 Gaps:9 96.23 292 43.06 5e-74 Xyloglucan endotransglucosylase/hydrolase protein 2 OS Arabidopsis thaliana GN XTH2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SV61|XTH1_ARATH 24 306 + 283 Gaps:17 94.52 292 40.58 1e-67 Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS Arabidopsis thaliana GN XTH1 PE 3 SV 2
blastp_uniprot_sprot sp|Q39099|XTH4_ARATH 15 311 + 297 Gaps:13 98.65 296 38.01 3e-65 Xyloglucan endotransglucosylase/hydrolase protein 4 OS Arabidopsis thaliana GN XTH4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9XIW1|XTH5_ARATH 16 311 + 296 Gaps:10 98.29 293 37.50 5e-65 Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS Arabidopsis thaliana GN XTH5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LJR7|XTH3_ARATH 17 306 + 290 Gaps:15 98.28 290 40.70 6e-65 Xyloglucan endotransglucosylase/hydrolase protein 3 OS Arabidopsis thaliana GN XTH3 PE 2 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 24 312 289 PTHR31062 none none none
Phobius 1 33 33 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 34 352 319 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 18 28 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
PANTHER 24 312 289 PTHR31062:SF16 none none none
Phobius 29 33 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
SUPERFAMILY 42 310 269 SSF49899 none none IPR013320
Phobius 1 17 17 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
PIRSF 13 311 299 PIRSF005604 none none IPR016455
Gene3D 39 309 271 G3DSA:2.60.120.200 none none IPR013320
Pfam 257 306 50 PF06955 none Xyloglucan endo-transglycosylase (XET) C-terminus IPR010713
Pfam 45 227 183 PF00722 none Glycosyl hydrolases family 16 IPR000757

1 Localization

Analysis Start End Length
TMHMM 13 35 22

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2002_QTL17_peak_Bud_burst_A4 Qrob_Chr12 12 s_1CTJ3J_556 s_1CTJ3J_556 0 0 25 lod 2,9 6
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 33   Secretory pathway 5 0.775 0.014 NON-PLANT 33