Protein : Qrob_P0144480.2 Q. robur
Protein Identifier  ? Qrob_P0144480.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PF01535//PF05148//PF13041//PF14432 - PPR repeat // Hypothetical methyltransferase // PPR repeat family // DYW family of nucleic acid deaminases Gene Prediction Quality  validated
Protein length 

Sequence

Length: 676  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

1 GO Terms

Identifier Name Description
GO:0008168 methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.

29 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_016613 1 603 + 603 Gaps:1 85.92 703 75.83 0.0 Tetratricopeptide repeat-like superfamily protein
blastp_kegg lcl|pop:POPTR_0001s01780g 1 604 + 604 Gaps:4 100.00 602 76.25 0.0 pentatricopeptide repeat-containing family protein
blastp_kegg lcl|pper:PRUPE_ppa003110mg 1 604 + 604 Gaps:4 100.00 602 76.74 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10000638mg 1 604 + 604 Gaps:1 100.00 605 75.21 0.0 hypothetical protein
blastp_kegg lcl|cit:102621081 1 604 + 604 Gaps:1 100.00 605 75.21 0.0 pentatricopeptide repeat-containing protein At1g31920-like
blastp_kegg lcl|pmum:103336820 1 604 + 604 Gaps:4 100.00 602 75.75 0.0 pentatricopeptide repeat-containing protein At1g31920
blastp_kegg lcl|vvi:100247257 1 604 + 604 Gaps:1 100.00 605 73.06 0.0 pentatricopeptide repeat-containing protein At1g31920-like
blastp_kegg lcl|gmx:100795944 1 604 + 604 Gaps:1 100.00 605 73.88 0.0 pentatricopeptide repeat-containing protein At1g31920-like
blastp_kegg lcl|gmx:100804442 1 604 + 604 Gaps:1 100.00 605 73.72 0.0 pentatricopeptide repeat-containing protein At1g31920-like
blastp_kegg lcl|pvu:PHAVU_002G134100g 1 604 + 604 Gaps:1 100.00 605 73.39 0.0 hypothetical protein
blastp_pdb 2zfu_B 605 671 + 67 none 31.16 215 52.24 5e-15 mol:protein length:215 Cerebral protein 1
blastp_pdb 2zfu_A 605 671 + 67 none 31.16 215 52.24 5e-15 mol:protein length:215 Cerebral protein 1
blastp_uniprot_sprot sp|Q9C6T2|PPR68_ARATH 1 604 + 604 Gaps:12 100.00 606 60.40 0.0 Pentatricopeptide repeat-containing protein At1g31920 OS Arabidopsis thaliana GN PCMP-H11 PE 2 SV 1
blastp_uniprot_sprot sp|A8MQA3|PP330_ARATH 31 604 + 574 Gaps:8 97.48 595 41.21 8e-157 Pentatricopeptide repeat-containing protein At4g21065 OS Arabidopsis thaliana GN PCMP-H28 PE 2 SV 2
blastp_uniprot_sprot sp|Q9FI80|PP425_ARATH 37 604 + 568 Gaps:57 95.51 646 37.76 2e-150 Pentatricopeptide repeat-containing protein At5g48910 OS Arabidopsis thaliana GN PCMP-H38 PE 2 SV 1
blastp_uniprot_sprot sp|Q9STF3|PP265_ARATH 31 604 + 574 Gaps:15 88.43 657 41.14 1e-149 Pentatricopeptide repeat-containing protein At3g46790 chloroplastic OS Arabidopsis thaliana GN CRR2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FJY7|PP449_ARATH 24 604 + 581 Gaps:34 98.87 620 38.01 6e-148 Pentatricopeptide repeat-containing protein At5g66520 OS Arabidopsis thaliana GN PCMP-H61 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FG16|PP367_ARATH 26 604 + 579 Gaps:37 98.71 622 37.79 4e-147 Pentatricopeptide repeat-containing protein At5g06540 OS Arabidopsis thaliana GN PCMP-H88 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SZT8|PP354_ARATH 26 604 + 579 Gaps:38 96.36 632 37.93 2e-146 Pentatricopeptide repeat-containing protein At4g37380 chloroplastic OS Arabidopsis thaliana GN PCMP-H48 PE 3 SV 1
blastp_uniprot_sprot sp|Q9FND7|PP410_ARATH 27 604 + 578 Gaps:34 99.67 612 37.70 2e-144 Putative pentatricopeptide repeat-containing protein At5g40405 OS Arabidopsis thaliana GN PCMP-H14 PE 3 SV 1
blastp_uniprot_sprot sp|Q8LK93|PP145_ARATH 31 604 + 574 Gaps:4 95.19 603 39.72 3e-144 Pentatricopeptide repeat-containing protein At2g02980 OS Arabidopsis thaliana GN PCMP-H26 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SN39|PP320_ARATH 34 604 + 571 Gaps:58 92.65 871 42.50 1e-142 Pentatricopeptide repeat-containing protein At4g18750 chloroplastic OS Arabidopsis thaliana GN PCMP-H45 PE 2 SV 1
rpsblast_cdd gnl|CDD|178626 23 602 + 580 Gaps:76 93.70 857 45.21 1e-117 PLN03077 PLN03077 Protein ECB2 Provisional.
rpsblast_cdd gnl|CDD|178630 34 604 + 571 Gaps:58 88.67 697 45.47 1e-116 PLN03081 PLN03081 pentatricopeptide (PPR) repeat-containing protein Provisional.
rpsblast_cdd gnl|CDD|203179 605 671 + 67 Gaps:2 31.51 219 37.68 2e-15 pfam05148 Methyltransf_8 Hypothetical methyltransferase. This family consists of several uncharacterized eukaryotic proteins which are related to methyltransferases pfam01209.
rpsblast_cdd gnl|CDD|206598 470 594 + 125 Gaps:21 100.00 116 39.66 7e-15 pfam14432 DYW_deaminase DYW family of nucleic acid deaminases. A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria plants Naegleria and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions which are independent lateral transfers contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems.
rpsblast_cdd gnl|CDD|178757 68 420 + 353 Gaps:100 33.96 1060 38.06 1e-11 PLN03218 PLN03218 maturation of RBCL 1 Provisional.
rpsblast_cdd gnl|CDD|205222 93 142 + 50 none 100.00 50 34.00 5e-07 pfam13041 PPR_2 PPR repeat family. This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
rpsblast_kog gnl|CDD|38255 605 671 + 67 none 20.62 325 40.30 1e-17 KOG3045 KOG3045 KOG3045 Predicted RNA methylase involved in rRNA processing [RNA processing and modification].

21 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
TIGRFAM 97 129 33 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 300 332 33 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 334 368 35 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 270 296 27 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
Pfam 482 594 113 PF14432 none DYW family of nucleic acid deaminases none
Pfam 198 225 28 PF01535 none PPR repeat IPR002885
Pfam 169 194 26 PF01535 none PPR repeat IPR002885
Pfam 371 395 25 PF01535 none PPR repeat IPR002885
ProSiteProfiles 368 398 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 434 468 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 297 331 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
PANTHER 30 643 614 PTHR24015:SF318 none none none
ProSiteProfiles 129 163 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 94 128 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 164 198 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
PANTHER 30 643 614 PTHR24015 none none none
ProSiteProfiles 332 367 36 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 266 296 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Pfam 604 671 68 PF05148 none Hypothetical methyltransferase IPR007823
Pfam 296 344 49 PF13041 none PPR repeat family IPR002885
Pfam 93 142 50 PF13041 none PPR repeat family IPR002885

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2002_QTL17_peak_Bud_burst_A4 Qrob_Chr12 12 s_1CTJ3J_556 s_1CTJ3J_556 0 0 25 lod 2,9 6
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting