Protein : Qrob_P0142770.2 Q. robur
Protein Identifier  ? Qrob_P0142770.2 Organism . Name  Quercus robur
Score  93.4 Score Type  egn
Protein Description  (M=1) K08910 - light-harvesting complex I chlorophyll a/b binding protein 4 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 253  
Kegg Orthology  K08910
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0009765 photosynthesis, light harvesting Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100802922 1 251 + 251 none 86.25 291 89.64 4e-170 chlorophyll a-b binding protein P4 chloroplastic-like
blastp_kegg lcl|vvi:100232934 1 251 + 251 none 99.60 252 90.84 1e-169 LHCA1 chlorophyll a/b-binding protein
blastp_kegg lcl|pvu:PHAVU_009G186500g 1 251 + 251 none 99.60 252 90.04 5e-169 hypothetical protein
blastp_kegg lcl|cit:102630539 1 252 + 252 Gaps:2 100.00 250 91.60 9e-169 chlorophyll a-b binding protein P4 chloroplastic-like
blastp_kegg lcl|gmx:100798548 1 251 + 251 none 85.96 292 89.64 1e-168 chlorophyll a-b binding protein P4 chloroplastic-like
blastp_kegg lcl|csv:101225503 1 252 + 252 none 100.00 252 89.29 2e-167 chlorophyll a-b binding protein P4 chloroplastic-like
blastp_kegg lcl|csv:101222701 1 252 + 252 none 100.00 252 89.29 2e-167 chlorophyll a-b binding protein P4 chloroplastic-like
blastp_kegg lcl|cmo:103493999 1 252 + 252 none 100.00 252 89.29 6e-167 chlorophyll a-b binding protein P4 chloroplastic
blastp_kegg lcl|tcc:TCM_014050 1 251 + 251 none 99.60 252 88.05 3e-166 Light-harvesting chlorophyll-protein complex I subunit A4
blastp_kegg lcl|cic:CICLE_v10021861mg 1 252 + 252 Gaps:3 100.00 249 91.16 1e-165 hypothetical protein
blastp_pdb 2wsf_4 1 252 + 252 Gaps:1 100.00 251 84.06 3e-155 mol:protein length:251 CHLOROPHYLL A-B BINDING PROTEIN P4 CHLOROPLA
blastp_pdb 2wse_4 1 252 + 252 Gaps:1 100.00 251 84.06 3e-155 mol:protein length:251 CHLOROPHYLL A-B BINDING PROTEIN P4 CHLOROPLA
blastp_pdb 2wsc_4 1 252 + 252 Gaps:1 100.00 251 84.06 3e-155 mol:protein length:251 CHLOROPHYLL A-B BINDING PROTEIN P4 CHLOROPLA
blastp_pdb 2o01_4 85 249 + 165 none 100.00 165 89.70 6e-108 mol:protein length:165 PSI light-harvesting antenna chlorophyll a/b-
blastp_pdb 3lw5_4 81 247 + 167 Gaps:1 100.00 166 89.76 4e-107 mol:protein length:166 Chlorophyll a-b binding protein P4 chloropla
blastp_pdb 2wsf_2 39 250 + 212 Gaps:8 81.04 269 51.83 9e-72 mol:protein length:269 TYPE II CHLOROPHYLL A/B BINDING PROTEIN FROM
blastp_pdb 2wse_2 39 250 + 212 Gaps:8 81.04 269 51.83 9e-72 mol:protein length:269 TYPE II CHLOROPHYLL A/B BINDING PROTEIN FROM
blastp_pdb 2wsc_2 39 250 + 212 Gaps:8 81.04 269 51.83 9e-72 mol:protein length:269 TYPE II CHLOROPHYLL A/B BINDING PROTEIN FROM
blastp_pdb 2o01_2 63 242 + 180 Gaps:6 100.00 186 55.91 2e-70 mol:protein length:186 Type II chlorophyll a/b binding protein from
blastp_pdb 3lw5_2 84 250 + 167 Gaps:6 98.30 176 52.02 2e-59 mol:protein length:176 Type II chlorophyll a/b binding protein from
blastp_uniprot_sprot sp|Q9SQL2|CB24_PEA 1 252 + 252 none 100.00 252 84.13 4e-157 Chlorophyll a-b binding protein P4 chloroplastic OS Pisum sativum GN lhcA-P4 PE 1 SV 1
blastp_uniprot_sprot sp|P27521|CA4_ARATH 1 250 + 250 Gaps:1 100.00 251 83.67 8e-157 Chlorophyll a-b binding protein 4 chloroplastic OS Arabidopsis thaliana GN LHCA4 PE 1 SV 1
blastp_uniprot_sprot sp|Q36718|CB120_HORVU 38 251 + 214 Gaps:6 93.51 231 73.61 4e-111 Chlorophyll a-b binding protein 1B-20 chloroplastic (Fragment) OS Hordeum vulgare GN LHC Ib-20 PE 1 SV 1
blastp_uniprot_sprot sp|P13869|CB12_PETHY 17 250 + 234 Gaps:6 88.89 270 49.58 4e-77 Chlorophyll a-b binding protein chloroplastic OS Petunia hybrida PE 2 SV 1
blastp_uniprot_sprot sp|P10708|CB12_SOLLC 18 250 + 233 Gaps:6 88.52 270 48.54 4e-76 Chlorophyll a-b binding protein 7 chloroplastic OS Solanum lycopersicum GN CAB7 PE 3 SV 1
blastp_uniprot_sprot sp|P27522|CB13_SOLLC 17 249 + 233 Gaps:36 93.41 273 41.96 1e-44 Chlorophyll a-b binding protein 8 chloroplastic OS Solanum lycopersicum GN CAB8 PE 3 SV 1
blastp_uniprot_sprot sp|Q32904|CB23_PEA 56 249 + 194 Gaps:33 78.18 275 44.19 3e-43 Chlorophyll a-b binding protein 3 chloroplastic OS Pisum sativum GN lhca3 PE 1 SV 1
blastp_uniprot_sprot sp|Q01667|CAB6_ARATH 55 245 + 191 Gaps:30 77.59 241 45.45 3e-42 Chlorophyll a-b binding protein 6 chloroplastic OS Arabidopsis thaliana GN LHCA1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SDM1|CB121_HORVU 41 245 + 205 Gaps:33 80.82 245 44.95 1e-41 Chlorophyll a-b binding protein 1B-21 chloroplastic OS Hordeum vulgare GN LHC Ib-21 PE 1 SV 1
blastp_uniprot_sprot sp|P12360|CB11_SOLLC 22 245 + 224 Gaps:33 88.21 246 40.55 6e-41 Chlorophyll a-b binding protein 6A chloroplastic OS Solanum lycopersicum GN CAB6A PE 2 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 14 18 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
SUPERFAMILY 53 249 197 SSF103511 none none IPR023329
Pfam 63 222 160 PF00504 none Chlorophyll A-B binding protein IPR022796
Gene3D 55 248 194 G3DSA:1.10.3460.10 none none IPR023329
Phobius 19 252 234 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 2 13 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 1 1 1 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
PANTHER 10 250 241 PTHR21649:SF4 none none none
Phobius 1 18 18 SIGNAL_PEPTIDE none Signal peptide region none
PANTHER 10 250 241 PTHR21649 none none IPR001344

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 39   Mitochondrion 3 0.026 0.777 NON-PLANT 39