Protein : Qrob_P0141960.2 Q. robur
Protein Identifier  ? Qrob_P0141960.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) KOG0078//KOG0083//KOG0084//KOG0087//KOG0088//KOG0091//KOG0092//KOG0094//KOG0098//KOG0395 - GTP-binding protein SEC4 small G protein superfamily and related Ras family GTP-binding proteins [Signal transduction mechanisms Intracellular trafficking secretion and vesicular transport]. // GTPase Rab26/Rab37 small G protein superfamily [General function prediction only]. // GTPase Rab1/YPT1 small G protein superfamily and related GTP-binding proteins [Signal transduction mechanisms Intracellular trafficking secretion and vesicular transport]. // GTPase Rab11/YPT3 small G protein superfamily [Intracellular trafficking secretion and vesicular transport]. // GTPase Rab21 small G protein superfamily [General function prediction only]. // GTPase Rab39 small G protein superfamily [General function prediction only]. // GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking secretion and vesicular transport]. // GTPase Rab6/YPT6/Ryh1 small G protein superfamily [Intracellular trafficking secretion and vesicular transport]. // GTPase Rab2 small G protein superfamily [Intracellular trafficking secretion and vesicular transport]. // Ras-related GTPase [General function prediction only]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 169  
Kegg Orthology  K07893
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0007165 signal transduction The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005525 GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO:0015031 protein transport The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0007264 small GTPase mediated signal transduction Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_0658840 1 168 + 168 Gaps:33 96.63 208 77.11 4e-101 protein with unknown function (EC:3.1.4.12)
blastp_kegg lcl|tcc:TCM_005800 1 167 + 167 Gaps:33 96.15 208 77.00 3e-100 Ras-related small GTP-binding family protein
blastp_kegg lcl|cic:CICLE_v10022269mg 1 168 + 168 Gaps:33 96.63 208 75.62 4e-100 hypothetical protein
blastp_kegg lcl|cit:102614860 1 168 + 168 Gaps:33 96.63 208 75.62 4e-100 ras-related protein RABH1b-like
blastp_kegg lcl|vvi:100263235 1 168 + 168 Gaps:33 96.63 208 76.12 6e-100 ras-related protein RABH1b-like
blastp_kegg lcl|pper:PRUPE_ppa011501mg 1 167 + 167 Gaps:33 96.15 208 76.50 1e-99 hypothetical protein
blastp_kegg lcl|pop:POPTR_0002s13650g 1 167 + 167 Gaps:33 96.15 208 76.50 3e-99 POPTRDRAFT_816507 Ras-related GTP-binding family protein
blastp_kegg lcl|rcu:RCOM_0519920 1 167 + 167 Gaps:33 96.15 208 76.00 9e-99 protein with unknown function
blastp_kegg lcl|cmo:103503500 1 168 + 168 Gaps:33 96.63 208 75.12 2e-98 ras-related protein RABH1b
blastp_kegg lcl|csv:101228969 1 168 + 168 Gaps:33 96.63 208 75.12 2e-98 ras-related protein RABH1b-like
blastp_pdb 3cwz_A 5 157 + 153 Gaps:33 98.94 188 57.53 1e-69 mol:protein length:188 Ras-related protein Rab-6A
blastp_pdb 3bbp_C 5 168 + 164 Gaps:38 91.00 211 57.29 1e-69 mol:protein length:211 Ras-related protein Rab-6A
blastp_pdb 3bbp_B 5 168 + 164 Gaps:38 91.00 211 57.29 1e-69 mol:protein length:211 Ras-related protein Rab-6A
blastp_pdb 3bbp_A 5 168 + 164 Gaps:38 91.00 211 57.29 1e-69 mol:protein length:211 Ras-related protein Rab-6A
blastp_pdb 1yzq_A 5 140 + 136 Gaps:33 99.41 170 61.54 9e-67 mol:protein length:170 small GTP binding protein RAB6 isoform
blastp_pdb 2y8e_B 5 140 + 136 Gaps:33 94.41 179 61.54 9e-67 mol:protein length:179 RAB-PROTEIN 6
blastp_pdb 2y8e_A 5 140 + 136 Gaps:33 94.41 179 61.54 9e-67 mol:protein length:179 RAB-PROTEIN 6
blastp_pdb 2gil_D 9 137 + 129 Gaps:33 100.00 162 61.73 1e-63 mol:protein length:162 Ras-related protein Rab-6A
blastp_pdb 2gil_C 9 137 + 129 Gaps:33 100.00 162 61.73 1e-63 mol:protein length:162 Ras-related protein Rab-6A
blastp_pdb 2gil_B 9 137 + 129 Gaps:33 100.00 162 61.73 1e-63 mol:protein length:162 Ras-related protein Rab-6A
blastp_uniprot_sprot sp|O80501|RAH1B_ARATH 1 167 + 167 Gaps:33 96.15 208 74.00 1e-97 Ras-related protein RABH1b OS Arabidopsis thaliana GN RABH1B PE 1 SV 1
blastp_uniprot_sprot sp|Q9LFT9|RAH1E_ARATH 1 167 + 167 Gaps:34 97.10 207 71.64 1e-90 Ras-related protein RABH1e OS Arabidopsis thaliana GN RABH1E PE 2 SV 1
blastp_uniprot_sprot sp|Q9SID8|RAH1D_ARATH 1 167 + 167 Gaps:33 96.62 207 66.00 7e-84 Ras-related protein RABH1d OS Arabidopsis thaliana GN RABH1D PE 3 SV 1
blastp_uniprot_sprot sp|Q9SMR4|RAH1C_ARATH 1 163 + 163 Gaps:35 92.52 214 62.63 3e-75 Ras-related protein RABH1c OS Arabidopsis thaliana GN RABH1C PE 1 SV 1
blastp_uniprot_sprot sp|Q9LV79|RAH1A_ARATH 10 165 + 156 Gaps:37 93.69 206 62.69 4e-72 Ras-related protein RABH1a OS Arabidopsis thaliana GN RABH1A PE 2 SV 1
blastp_uniprot_sprot sp|Q9WVB1|RAB6A_RAT 5 168 + 164 Gaps:38 92.31 208 57.81 2e-70 Ras-related protein Rab-6A OS Rattus norvegicus GN Rab6a PE 2 SV 2
blastp_uniprot_sprot sp|P35279|RAB6A_MOUSE 5 168 + 164 Gaps:38 92.31 208 57.81 2e-70 Ras-related protein Rab-6A OS Mus musculus GN Rab6a PE 1 SV 4
blastp_uniprot_sprot sp|Q5RAV6|RAB6A_PONAB 5 168 + 164 Gaps:38 92.31 208 57.81 2e-70 Ras-related protein Rab-6A OS Pongo abelii GN RAB6A PE 2 SV 3
blastp_uniprot_sprot sp|P20340|RAB6A_HUMAN 5 168 + 164 Gaps:38 92.31 208 57.81 2e-70 Ras-related protein Rab-6A OS Homo sapiens GN RAB6A PE 1 SV 3
blastp_uniprot_sprot sp|Q1KME6|RAB6A_CHICK 5 168 + 164 Gaps:38 92.31 208 57.29 9e-70 Ras-related protein Rab-6A OS Gallus gallus GN RAB6A PE 2 SV 3

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 30 136 107 PF00071 none Ras family IPR001806
ProSiteProfiles 1 168 168 PS51419 none small GTPase Rab1 family profile. none
Gene3D 33 163 131 G3DSA:3.40.50.300 none none IPR027417
SMART 7 140 134 SM00173 none Ras subfamily of RAS small GTPases IPR020849
SMART 12 139 128 SM00174 "Reactome:REACT_11044" Rho (Ras homology) subfamily of Ras-like small GTPases IPR003578
TIGRFAM 29 133 105 TIGR00231 none small_GTP: small GTP-binding protein domain IPR005225
PANTHER 2 167 166 PTHR24073:SF318 none none none
Gene3D 9 32 24 G3DSA:3.30.70.1390 none none none
SUPERFAMILY 9 150 142 SSF52540 none none IPR027417
PRINTS 80 93 14 PR00449 none Transforming protein P21 ras signature IPR001806
PRINTS 18 40 23 PR00449 none Transforming protein P21 ras signature IPR001806
PRINTS 115 137 23 PR00449 none Transforming protein P21 ras signature IPR001806
PANTHER 2 167 166 PTHR24073 none none none
SMART 10 140 131 SM00175 none Rab subfamily of small GTPases IPR003579

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting