Protein : Qrob_P0140110.2 Q. robur
Protein Identifier  ? Qrob_P0140110.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) K12161 - ubiquitin related modifier 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 51  
Kegg Orthology  K12161
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0034227 tRNA thio-modification The addition a sulfur atom to a nucleotide in a tRNA molecule.

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1613470 13 50 + 38 none 38.38 99 100.00 2e-18 Protein C9orf74 putative
blastp_kegg lcl|cmo:103499050 13 50 + 38 none 38.38 99 100.00 3e-18 ubiquitin-related modifier 1 homolog 2
blastp_kegg lcl|csv:101203822 13 50 + 38 none 38.38 99 100.00 3e-18 ubiquitin-related modifier 1 homolog 2-like
blastp_kegg lcl|cic:CICLE_v10023026mg 13 50 + 38 none 38.38 99 100.00 3e-18 hypothetical protein
blastp_kegg lcl|cit:102616842 13 50 + 38 none 38.38 99 100.00 3e-18 ubiquitin-related modifier 1 homolog 2-like
blastp_kegg lcl|vvi:100257432 13 50 + 38 none 38.38 99 97.37 3e-18 ubiquitin-related modifier 1 homolog 2-like
blastp_kegg lcl|csv:101204997 13 50 + 38 none 37.62 101 100.00 3e-18 ubiquitin-related modifier 1 homolog 2-like
blastp_kegg lcl|pper:PRUPE_ppa013867mg 13 50 + 38 none 38.38 99 97.37 4e-18 hypothetical protein
blastp_kegg lcl|pmum:103335933 13 50 + 38 none 38.38 99 97.37 5e-18 ubiquitin-related modifier 1 homolog 2
blastp_kegg lcl|mdm:103432761 13 50 + 38 none 38.38 99 97.37 5e-18 ubiquitin-related modifier 1 homolog 2
blastp_pdb 1xo3_A 13 50 + 38 none 37.62 101 65.79 6e-13 mol:protein length:101 RIKEN cDNA 2900073H19
blastp_pdb 1wgk_A 13 50 + 38 none 33.33 114 65.79 7e-13 mol:protein length:114 RIKEN cDNA 2900073H19 protein
blastp_pdb 2qjl_A 13 50 + 38 none 38.38 99 57.89 3e-11 mol:protein length:99 Ubiquitin-related modifier 1
blastp_pdb 2pko_A 13 50 + 38 none 38.38 99 57.89 3e-11 mol:protein length:99 Ubiquitin-related modifier 1
blastp_pdb 2ax5_A 13 50 + 38 none 35.51 107 57.89 3e-11 mol:protein length:107 Hypothetical 11.0 kDa protein in FAA3-MAS3 in
blastp_pdb 2k9x_A 3 50 + 48 none 43.64 110 56.25 3e-11 mol:protein length:110 Uncharacterized protein
blastp_uniprot_sprot sp|B3H7G2|URM12_ARATH 13 50 + 38 none 38.38 99 94.74 4e-19 Ubiquitin-related modifier 1 homolog 2 OS Arabidopsis thaliana GN URM1-2 PE 3 SV 1
blastp_uniprot_sprot sp|A0MDQ1|URM11_ARATH 13 50 + 38 none 37.62 101 92.11 6e-18 Ubiquitin-related modifier 1 homolog 1 OS Arabidopsis thaliana GN URM1-1 PE 3 SV 2
blastp_uniprot_sprot sp|B6SXH2|URM1_MAIZE 13 50 + 38 none 37.62 101 86.84 3e-16 Ubiquitin-related modifier 1 homolog OS Zea mays GN URM1 PE 3 SV 1
blastp_uniprot_sprot sp|Q0D6M1|URM1_ORYSJ 13 50 + 38 none 38.00 100 86.84 3e-16 Ubiquitin-related modifier 1 homolog OS Oryza sativa subsp. japonica GN URM1 PE 3 SV 1
blastp_uniprot_sprot sp|Q7GBC8|URM1_ORYSI 13 50 + 38 none 38.00 100 86.84 3e-16 Ubiquitin-related modifier 1 homolog OS Oryza sativa subsp. indica GN URM1 PE 3 SV 1
blastp_uniprot_sprot sp|A8IC48|URM1_CHLRE 13 50 + 38 none 38.38 99 71.05 1e-13 Ubiquitin-related modifier 1 homolog OS Chlamydomonas reinhardtii GN URM1 PE 3 SV 1
blastp_uniprot_sprot sp|Q5ZJU4|URM1_CHICK 13 50 + 38 none 37.62 101 68.42 7e-13 Ubiquitin-related modifier 1 OS Gallus gallus GN URM1 PE 3 SV 1
blastp_uniprot_sprot sp|A9YUB5|URM1_CAPHI 13 50 + 38 none 37.62 101 71.05 9e-13 Ubiquitin-related modifier 1 OS Capra hircus GN URM1 PE 3 SV 1
blastp_uniprot_sprot sp|Q148F0|URM1_BOVIN 13 50 + 38 none 37.62 101 71.05 9e-13 Ubiquitin-related modifier 1 OS Bos taurus GN URM1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9BTM9|URM1_HUMAN 13 50 + 38 none 37.62 101 68.42 1e-12 Ubiquitin-related modifier 1 OS Homo sapiens GN URM1 PE 1 SV 1
rpsblast_cdd gnl|CDD|149991 13 50 + 38 none 39.58 96 71.05 6e-15 pfam09138 Urm1 Urm1 (Ubiquitin related modifier). Urm1 is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like pathway urmylation. Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily.
rpsblast_cdd gnl|CDD|176360 13 50 + 38 none 40.43 94 68.42 1e-13 cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein) is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
rpsblast_cdd gnl|CDD|34732 13 50 + 38 none 39.58 96 57.89 1e-08 COG5131 URM1 Ubiquitin-like protein [Posttranslational modification protein turnover chaperones].
rpsblast_kog gnl|CDD|39349 13 50 + 38 none 37.62 101 63.16 4e-11 KOG4146 KOG4146 KOG4146 Ubiquitin-like protein [Posttranslational modification protein turnover chaperones].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 9 50 42 PF09138 "UniPathway:UPA00988" Urm1 (Ubiquitin related modifier) IPR015221
PANTHER 13 50 38 PTHR14986:SF4 "UniPathway:UPA00988";signature_desc=gb def: agcp5965 [anopheles gambiae str. pest] none IPR015221
SUPERFAMILY 10 50 41 SSF54285 none none IPR016155
Gene3D 10 50 41 G3DSA:3.10.20.30 none none IPR012675
PANTHER 13 50 38 PTHR14986 none none none

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting