Protein : Qrob_P0139000.2 Q. robur
Protein Identifier  ? Qrob_P0139000.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K17675 - ATP-dependent RNA helicase SUPV3L1/SUV3 [EC:3.6.4.13] Code Enzyme  EC:3.6.4.13
Gene Prediction Quality  validated Protein length 

Sequence

Length: 796  
Kegg Orthology  K17675
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0016817 hydrolase activity, acting on acid anhydrides Catalysis of the hydrolysis of any acid anhydride.

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103329996 2 795 + 794 Gaps:53 97.08 823 75.47 0.0 ATP-dependent RNA helicase SUPV3L1 mitochondrial
blastp_kegg lcl|pper:PRUPE_ppa001533mg 2 795 + 794 Gaps:43 99.13 806 75.34 0.0 hypothetical protein
blastp_kegg lcl|pxb:103933076 2 795 + 794 Gaps:44 97.09 824 73.75 0.0 ATP-dependent RNA helicase SUPV3L1 mitochondrial
blastp_kegg lcl|mdm:103404437 2 795 + 794 Gaps:45 97.08 821 73.78 0.0 ATP-dependent RNA helicase SUPV3L1 mitochondrial
blastp_kegg lcl|fve:101294582 2 795 + 794 Gaps:49 97.40 808 74.33 0.0 ATP-dependent RNA helicase SUPV3L1 mitochondrial-like
blastp_kegg lcl|tcc:TCM_018504 7 795 + 789 Gaps:75 98.36 852 70.05 0.0 ATP-dependent RNA helicase SUPV3L1 isoform 1
blastp_kegg lcl|vvi:100853943 44 795 + 752 Gaps:53 92.68 806 75.77 0.0 ATP-dependent RNA helicase SUPV3L1 mitochondrial-like
blastp_kegg lcl|cic:CICLE_v10011090mg 3 794 + 792 Gaps:61 96.68 814 73.82 0.0 hypothetical protein
blastp_kegg lcl|fve:101296048 3 795 + 793 Gaps:63 96.88 801 73.97 0.0 ATP-dependent RNA helicase SUPV3L1 mitochondrial-like
blastp_kegg lcl|cit:102629021 3 794 + 792 Gaps:66 96.66 809 73.79 0.0 ATP-dependent RNA helicase SUPV3L1 mitochondrial-like
blastp_pdb 3rc8_A 199 739 + 541 Gaps:63 84.79 677 41.46 4e-128 mol:protein length:677 ATP-dependent RNA helicase SUPV3L1 mitochond
blastp_pdb 3rc3_A 199 739 + 541 Gaps:63 84.79 677 41.46 4e-128 mol:protein length:677 ATP-dependent RNA helicase SUPV3L1 mitochond
blastp_pdb 4a4z_A 489 567 + 79 Gaps:2 7.72 997 38.96 3e-06 mol:protein length:997 ANTIVIRAL HELICASE SKI2
blastp_uniprot_sprot sp|Q8IYB8|SUV3_HUMAN 199 739 + 541 Gaps:63 73.03 786 41.46 2e-126 ATP-dependent RNA helicase SUPV3L1 mitochondrial OS Homo sapiens GN SUPV3L1 PE 1 SV 1
blastp_uniprot_sprot sp|Q5EBA1|SUV3_RAT 240 733 + 494 Gaps:53 67.91 776 42.50 2e-123 ATP-dependent RNA helicase SUPV3L1 mitochondrial OS Rattus norvegicus GN Supv3l1 PE 2 SV 1
blastp_uniprot_sprot sp|Q80YD1|SUV3_MOUSE 240 733 + 494 Gaps:53 67.65 779 42.13 5e-121 ATP-dependent RNA helicase SUPV3L1 mitochondrial OS Mus musculus GN Supv3l1 PE 2 SV 1
blastp_uniprot_sprot sp|Q5ZJT0|SUV3_CHICK 240 739 + 500 Gaps:54 67.00 794 41.92 8e-119 ATP-dependent RNA helicase SUPV3L1 mitochondrial OS Gallus gallus GN SUPV3L1 PE 2 SV 1
blastp_uniprot_sprot sp|A4IG62|SUV3_DANRE 227 739 + 513 Gaps:60 70.90 763 40.85 5e-118 ATP-dependent RNA helicase SUPV3L1 mitochondrial OS Danio rerio GN supv3l1 PE 2 SV 1
blastp_uniprot_sprot sp|Q61SU7|SUV3_CAEBR 275 733 + 459 Gaps:38 66.71 721 41.37 2e-110 ATP-dependent RNA helicase SUV3 homolog mitochondrial OS Caenorhabditis briggsae GN CBG06022 PE 3 SV 3
blastp_uniprot_sprot sp|Q9VN03|SUV3_DROME 277 773 + 497 Gaps:56 69.59 763 40.11 7e-110 ATP-dependent RNA helicase SUV3 homolog mitochondrial OS Drosophila melanogaster GN CG9791 PE 2 SV 3
blastp_uniprot_sprot sp|Q17828|SUV3_CAEEL 265 733 + 469 Gaps:40 67.82 721 40.29 2e-109 ATP-dependent RNA helicase SUV3 homolog mitochondrial OS Caenorhabditis elegans GN C08F8.2 PE 3 SV 2
blastp_uniprot_sprot sp|Q295E6|SUV3_DROPS 277 773 + 497 Gaps:61 69.03 762 39.16 9e-105 ATP-dependent RNA helicase SUV3 homolog mitochondrial OS Drosophila pseudoobscura pseudoobscura GN GA22038 PE 3 SV 1
blastp_uniprot_sprot sp|O94445|SUV3_SCHPO 303 730 + 428 Gaps:45 71.25 647 37.96 1e-96 ATP-dependent RNA helicase suv3 mitochondrial OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN suv3 PE 3 SV 1
rpsblast_cdd gnl|CDD|197757 486 567 + 82 Gaps:12 87.80 82 36.11 4e-12 smart00490 HELICc helicase superfamily c-terminal domain.
rpsblast_cdd gnl|CDD|201125 486 567 + 82 Gaps:12 92.31 78 34.72 7e-11 pfam00271 Helicase_C Helicase conserved C-terminal domain. The Prosite family is restricted to DEAD/H helicases whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit but an integral part of the helicase.
rpsblast_cdd gnl|CDD|30859 319 585 + 267 Gaps:35 49.90 513 21.09 2e-10 COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication recombination and repair / Transcription / Translation ribosomal structure and biogenesis].
rpsblast_cdd gnl|CDD|28960 451 567 + 117 Gaps:16 83.21 131 30.28 7e-10 cd00079 HELICc Helicase superfamily c-terminal domain associated with DEXDc- DEAD- and DEAH-box proteins yeast initiation factor 4A Ski2p and Hepatitis C virus NS3 helicases this domain is found in a wide variety of helicases and helicase related proteins may not be an autonomously folding unit but an integral part of the helicase 4 helicase superfamilies at present according to the organization of their signature motifs all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA unwinding the duplex in the process.
rpsblast_cdd gnl|CDD|204947 713 761 + 49 Gaps:1 97.96 49 33.33 3e-08 pfam12513 SUV3_C Mitochondrial degradasome RNA helicase subunit C terminal. This domain family is found in bacteria and eukaryotes and is approximately 50 amino acids in length. The family is found in association with pfam00271. The yeast mitochondrial degradosome (mtEXO) is an NTP-dependent exoribonuclease involved in mitochondrial RNA metabolism. mtEXO is made up of two subunits: an RNase (DSS1) and an RNA helicase (SUV3). These co-purify with mitochondrial ribosomes.
rpsblast_cdd gnl|CDD|34219 511 567 + 57 none 5.48 1041 36.84 5e-08 COG4581 COG4581 Superfamily II RNA helicase [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|31397 494 588 + 95 Gaps:4 12.40 766 33.68 8e-07 COG1204 COG1204 Superfamily II helicase [General function prediction only].

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 302 475 174 SM00487 none DEAD-like helicases superfamily IPR014001
Gene3D 466 568 103 G3DSA:3.40.50.300 none none IPR027417
SUPERFAMILY 320 579 260 SSF52540 none none IPR027417
Pfam 484 567 84 PF00271 none Helicase conserved C-terminal domain IPR001650
SMART 475 567 93 SM00490 none helicase superfamily c-terminal domain IPR001650
Pfam 713 761 49 PF12513 none Mitochondrial degradasome RNA helicase subunit C terminal IPR022192
ProSiteProfiles 314 430 117 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
ProSiteProfiles 452 606 155 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
Gene3D 317 428 112 G3DSA:3.40.50.300 none none IPR027417
PANTHER 192 795 604 PTHR12131:SF1 none none none
PANTHER 192 795 604 PTHR12131 none none none

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 57   Mitochondrion 4 0.285 0.682 NON-PLANT 57