Protein : Qrob_P0138840.2 Q. robur
Protein Identifier  ? Qrob_P0138840.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) PF00560//PF08263//PF13504 - Leucine Rich Repeat // Leucine rich repeat N-terminal domain // Leucine rich repeat Gene Prediction Quality  validated
Protein length 

Sequence

Length: 788  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100253527 1 772 + 772 Gaps:45 97.67 814 59.62 0.0 LRR receptor-like serine/threonine-protein kinase GSO1
blastp_kegg lcl|pop:POPTR_0001s04040g 18 787 + 770 Gaps:30 97.89 805 56.60 0.0 POPTRDRAFT_750424 hypothetical protein
blastp_kegg lcl|cit:102618284 17 787 + 771 Gaps:47 97.06 816 58.71 0.0 probable LRR receptor-like serine/threonine-protein kinase At1g34110-like
blastp_kegg lcl|rcu:RCOM_0343070 16 777 + 762 Gaps:35 96.20 816 55.54 0.0 serine-threonine protein kinase plant-type putative (EC:1.3.1.74)
blastp_kegg lcl|vvi:100263825 20 777 + 758 Gaps:45 95.65 827 55.50 0.0 LRR receptor-like serine/threonine-protein kinase GSO2-like
blastp_kegg lcl|cic:CICLE_v10024612mg 13 769 + 757 Gaps:36 95.00 820 53.02 0.0 hypothetical protein
blastp_kegg lcl|csv:101212880 19 773 + 755 Gaps:41 93.11 842 53.19 0.0 LRR receptor-like serine/threonine-protein kinase GSO1-like
blastp_kegg lcl|cic:CICLE_v10018053mg 17 717 + 701 Gaps:49 96.85 731 60.17 0.0 hypothetical protein
blastp_kegg lcl|cmo:103492419 4 779 + 776 Gaps:44 97.93 823 53.23 0.0 LRR receptor-like serine/threonine-protein kinase GSO1
blastp_kegg lcl|pmum:103338993 51 787 + 737 Gaps:26 99.05 740 54.57 0.0 LRR receptor-like serine/threonine-protein kinase FLS2
blastp_pdb 3rgz_A 51 729 + 679 Gaps:134 94.40 768 31.45 2e-60 mol:protein length:768 Protein BRASSINOSTEROID INSENSITIVE 1
blastp_pdb 3rgx_A 51 729 + 679 Gaps:134 94.40 768 31.45 2e-60 mol:protein length:768 Protein BRASSINOSTEROID INSENSITIVE 1
blastp_pdb 3rj0_A 51 729 + 679 Gaps:134 93.91 772 31.45 3e-60 mol:protein length:772 Protein BRASSINOSTEROID INSENSITIVE 1
blastp_pdb 3riz_A 51 729 + 679 Gaps:134 93.91 772 31.45 3e-60 mol:protein length:772 Protein BRASSINOSTEROID INSENSITIVE 1
blastp_pdb 1ogq_A 21 718 + 698 Gaps:109 97.12 313 54.93 8e-21 mol:protein length:313 POLYGALACTURONASE INHIBITING PROTEIN
blastp_pdb 2omt_A 98 341 + 244 Gaps:25 48.70 462 34.22 2e-07 mol:protein length:462 Internalin-A
blastp_pdb 2omu_A 98 341 + 244 Gaps:25 48.70 462 34.22 2e-07 mol:protein length:462 Internalin-A
blastp_pdb 2omx_A 98 341 + 244 Gaps:25 48.70 462 34.22 3e-07 mol:protein length:462 Internalin-A
blastp_pdb 2o6q_A 448 635 + 188 Gaps:12 71.11 270 28.65 5e-06 mol:protein length:270 Variable lymphocyte receptor A
blastp_uniprot_sprot sp|Q9C9H7|RLP12_ARATH 21 753 + 733 Gaps:94 91.26 847 31.95 2e-93 Receptor-like protein 12 OS Arabidopsis thaliana GN RLP12 PE 2 SV 2
blastp_uniprot_sprot sp|Q8VZG8|Y4885_ARATH 6 718 + 713 Gaps:99 62.58 1045 37.92 2e-88 Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS Arabidopsis thaliana GN At4g08850 PE 1 SV 3
blastp_uniprot_sprot sp|Q9FL28|FLS2_ARATH 1 751 + 751 Gaps:116 68.63 1173 32.30 1e-81 LRR receptor-like serine/threonine-protein kinase FLS2 OS Arabidopsis thaliana GN FLS2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LP24|Y1571_ARATH 25 696 + 672 Gaps:164 63.48 1120 39.10 8e-80 Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS Arabidopsis thaliana GN At1g35710 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FZ59|PEPR2_ARATH 95 717 + 623 Gaps:257 58.82 1088 61.41 2e-78 Leucine-rich repeat receptor-like protein kinase PEPR2 OS Arabidopsis thaliana GN PEPR2 PE 1 SV 1
blastp_uniprot_sprot sp|C0LGQ5|GSO1_ARATH 27 718 + 692 Gaps:173 67.25 1249 51.43 4e-76 LRR receptor-like serine/threonine-protein kinase GSO1 OS Arabidopsis thaliana GN GSO1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SHI2|Y1723_ARATH 24 730 + 707 Gaps:39 63.22 1101 33.91 4e-76 Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS Arabidopsis thaliana GN At1g17230 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LYN8|EXS_ARATH 94 761 + 668 Gaps:186 64.43 1192 48.57 2e-75 Leucine-rich repeat receptor protein kinase EXS OS Arabidopsis thaliana GN EXS PE 1 SV 1
blastp_uniprot_sprot sp|Q9LVP0|Y5639_ARATH 25 784 + 760 Gaps:83 67.79 1102 32.93 3e-74 Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS Arabidopsis thaliana GN At5g63930 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SSL9|PEPR1_ARATH 103 717 + 615 Gaps:165 59.57 1123 48.13 5e-74 Leucine-rich repeat receptor-like protein kinase PEPR1 OS Arabidopsis thaliana GN PEPR1 PE 1 SV 1
rpsblast_cdd gnl|CDD|177728 5 763 + 759 Gaps:205 65.60 968 56.54 1e-79 PLN00113 PLN00113 leucine-rich repeat receptor-like protein kinase Provisional.

43 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 229 245 17 PF13504 none Leucine rich repeat IPR001611
Phobius 4 15 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 16 20 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 21 742 722 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 21 71 51 SSF52058 none none none
SUPERFAMILY 103 344 242 SSF52058 none none none
PRINTS 536 549 14 PR00019 none Leucine-rich repeat signature none
PRINTS 326 339 14 PR00019 none Leucine-rich repeat signature none
SMART 227 253 27 SM00365 none Leucine-rich repeat, SDS22-like subfamily none
SMART 678 699 22 SM00365 none Leucine-rich repeat, SDS22-like subfamily none
SMART 179 205 27 SM00365 none Leucine-rich repeat, SDS22-like subfamily none
SMART 488 514 27 SM00365 none Leucine-rich repeat, SDS22-like subfamily none
SMART 536 562 27 SM00365 none Leucine-rich repeat, SDS22-like subfamily none
SUPERFAMILY 354 561 208 SSF52047 none none none
SUPERFAMILY 605 696 92 SSF52047 none none none
Phobius 1 3 3 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Pfam 23 70 48 PF08263 none Leucine rich repeat N-terminal domain IPR013210
SMART 131 155 25 SM00369 none Leucine-rich repeats, typical (most populated) subfamily IPR003591
SMART 488 512 25 SM00369 none Leucine-rich repeats, typical (most populated) subfamily IPR003591
SMART 106 130 25 SM00369 none Leucine-rich repeats, typical (most populated) subfamily IPR003591
SMART 654 677 24 SM00369 none Leucine-rich repeats, typical (most populated) subfamily IPR003591
SMART 536 559 24 SM00369 none Leucine-rich repeats, typical (most populated) subfamily IPR003591
SMART 251 275 25 SM00369 none Leucine-rich repeats, typical (most populated) subfamily IPR003591
SMART 179 202 24 SM00369 none Leucine-rich repeats, typical (most populated) subfamily IPR003591
SMART 203 227 25 SM00369 none Leucine-rich repeats, typical (most populated) subfamily IPR003591
Phobius 743 766 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 767 787 21 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 602 696 95 G3DSA:3.80.10.10 none none none
Phobius 1 20 20 SIGNAL_PEPTIDE none Signal peptide region none
PANTHER 116 269 154 PTHR24420 none none none

4 Localization

Analysis Start End Length
TMHMM 749 771 22
SignalP_GRAM_POSITIVE 1 20 19
SignalP_GRAM_NEGATIVE 1 20 19
SignalP_EUK 1 20 19

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 20   Secretory pathway 1 0.963 0.027 NON-PLANT 20