Protein : Qrob_P0138810.2 Q. robur
Protein Identifier  ? Qrob_P0138810.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=29) PF00560//PF08263 - Leucine Rich Repeat // Leucine rich repeat N-terminal domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 786  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100253527 1 776 + 776 Gaps:49 98.16 814 59.45 0.0 LRR receptor-like serine/threonine-protein kinase GSO1
blastp_kegg lcl|pop:POPTR_0001s04040g 17 785 + 769 Gaps:31 97.89 805 56.85 0.0 POPTRDRAFT_750424 hypothetical protein
blastp_kegg lcl|cit:102618284 16 783 + 768 Gaps:48 96.32 816 58.52 0.0 probable LRR receptor-like serine/threonine-protein kinase At1g34110-like
blastp_kegg lcl|rcu:RCOM_0343070 15 775 + 761 Gaps:36 96.20 816 55.54 0.0 serine-threonine protein kinase plant-type putative (EC:1.3.1.74)
blastp_kegg lcl|vvi:100263825 19 775 + 757 Gaps:46 95.65 827 54.99 0.0 LRR receptor-like serine/threonine-protein kinase GSO2-like
blastp_kegg lcl|cic:CICLE_v10024612mg 12 767 + 756 Gaps:39 95.00 820 53.79 0.0 hypothetical protein
blastp_kegg lcl|csv:101212880 18 771 + 754 Gaps:42 93.11 842 52.81 0.0 LRR receptor-like serine/threonine-protein kinase GSO1-like
blastp_kegg lcl|cic:CICLE_v10018053mg 16 715 + 700 Gaps:50 96.85 731 59.18 0.0 hypothetical protein
blastp_kegg lcl|cmo:103492419 18 784 + 767 Gaps:46 97.08 823 52.94 0.0 LRR receptor-like serine/threonine-protein kinase GSO1
blastp_kegg lcl|cit:102619599 12 767 + 756 Gaps:61 94.85 796 52.72 0.0 probable LRR receptor-like serine/threonine-protein kinase At1g34110-like
blastp_pdb 3rgz_A 50 727 + 678 Gaps:133 94.40 768 31.45 2e-56 mol:protein length:768 Protein BRASSINOSTEROID INSENSITIVE 1
blastp_pdb 3rgx_A 50 727 + 678 Gaps:133 94.40 768 31.45 2e-56 mol:protein length:768 Protein BRASSINOSTEROID INSENSITIVE 1
blastp_pdb 3rj0_A 102 727 + 626 Gaps:131 86.79 772 40.75 3e-56 mol:protein length:772 Protein BRASSINOSTEROID INSENSITIVE 1
blastp_pdb 3riz_A 102 727 + 626 Gaps:131 86.79 772 40.75 3e-56 mol:protein length:772 Protein BRASSINOSTEROID INSENSITIVE 1
blastp_pdb 1ogq_A 20 716 + 697 Gaps:128 97.12 313 58.88 4e-20 mol:protein length:313 POLYGALACTURONASE INHIBITING PROTEIN
blastp_pdb 2omt_A 97 340 + 244 Gaps:25 48.70 462 35.11 5e-07 mol:protein length:462 Internalin-A
blastp_pdb 2omu_A 97 340 + 244 Gaps:25 48.70 462 35.11 5e-07 mol:protein length:462 Internalin-A
blastp_pdb 2z66_D 107 273 + 167 Gaps:34 63.73 306 30.77 7e-07 mol:protein length:306 Variable lymphocyte receptor B Toll-like rec
blastp_pdb 2z66_C 107 273 + 167 Gaps:34 63.73 306 30.77 7e-07 mol:protein length:306 Variable lymphocyte receptor B Toll-like rec
blastp_pdb 2z66_B 107 273 + 167 Gaps:34 63.73 306 30.77 7e-07 mol:protein length:306 Variable lymphocyte receptor B Toll-like rec
blastp_uniprot_sprot sp|Q9C9H7|RLP12_ARATH 4 761 + 758 Gaps:96 94.21 847 32.08 4e-90 Receptor-like protein 12 OS Arabidopsis thaliana GN RLP12 PE 2 SV 2
blastp_uniprot_sprot sp|Q8VZG8|Y4885_ARATH 6 737 + 732 Gaps:122 64.69 1045 36.54 3e-83 Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS Arabidopsis thaliana GN At4g08850 PE 1 SV 3
blastp_uniprot_sprot sp|Q9FZ59|PEPR2_ARATH 94 710 + 617 Gaps:142 57.17 1088 57.56 4e-79 Leucine-rich repeat receptor-like protein kinase PEPR2 OS Arabidopsis thaliana GN PEPR2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SHI2|Y1723_ARATH 23 728 + 706 Gaps:40 63.22 1101 34.77 6e-78 Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS Arabidopsis thaliana GN At1g17230 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LP24|Y1571_ARATH 24 696 + 673 Gaps:204 63.48 1120 48.24 8e-77 Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS Arabidopsis thaliana GN At1g35710 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FL28|FLS2_ARATH 22 694 + 673 Gaps:72 52.43 1173 38.05 3e-76 LRR receptor-like serine/threonine-protein kinase FLS2 OS Arabidopsis thaliana GN FLS2 PE 1 SV 1
blastp_uniprot_sprot sp|P93194|RPK1_IPONI 47 785 + 739 Gaps:58 68.53 1109 32.11 4e-75 Receptor-like protein kinase OS Ipomoea nil GN INRPK1 PE 2 SV 2
blastp_uniprot_sprot sp|C0LGQ5|GSO1_ARATH 26 765 + 740 Gaps:142 70.54 1249 48.69 1e-74 LRR receptor-like serine/threonine-protein kinase GSO1 OS Arabidopsis thaliana GN GSO1 PE 2 SV 1
blastp_uniprot_sprot sp|C0LGS2|Y4361_ARATH 4 782 + 779 Gaps:88 69.63 1136 30.72 2e-74 Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS Arabidopsis thaliana GN At4g36180 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LYN8|EXS_ARATH 93 785 + 693 Gaps:188 66.61 1192 47.86 3e-74 Leucine-rich repeat receptor protein kinase EXS OS Arabidopsis thaliana GN EXS PE 1 SV 1

42 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 107 130 24 PF00560 none Leucine Rich Repeat IPR001611
Pfam 229 250 22 PF00560 none Leucine Rich Repeat IPR001611
Pfam 156 178 23 PF00560 none Leucine Rich Repeat IPR001611
Pfam 678 694 17 PF00560 none Leucine Rich Repeat IPR001611
Pfam 133 152 20 PF00560 none Leucine Rich Repeat IPR001611
Pfam 489 507 19 PF00560 none Leucine Rich Repeat IPR001611
Pfam 205 226 22 PF00560 none Leucine Rich Repeat IPR001611
Pfam 654 673 20 PF00560 none Leucine Rich Repeat IPR001611
SMART 487 516 30 SM00365 none Leucine-rich repeat, SDS22-like subfamily none
SMART 130 162 33 SM00365 none Leucine-rich repeat, SDS22-like subfamily none
SMART 676 697 22 SM00365 none Leucine-rich repeat, SDS22-like subfamily none
SMART 178 204 27 SM00365 none Leucine-rich repeat, SDS22-like subfamily none
SMART 226 252 27 SM00365 none Leucine-rich repeat, SDS22-like subfamily none
PRINTS 325 338 14 PR00019 none Leucine-rich repeat signature none
PRINTS 652 665 14 PR00019 none Leucine-rich repeat signature none
Phobius 1 3 3 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
SMART 178 201 24 SM00369 none Leucine-rich repeats, typical (most populated) subfamily IPR003591
SMART 202 226 25 SM00369 none Leucine-rich repeats, typical (most populated) subfamily IPR003591
SMART 250 274 25 SM00369 none Leucine-rich repeats, typical (most populated) subfamily IPR003591
SMART 130 154 25 SM00369 none Leucine-rich repeats, typical (most populated) subfamily IPR003591
SMART 487 510 24 SM00369 none Leucine-rich repeats, typical (most populated) subfamily IPR003591
SMART 105 129 25 SM00369 none Leucine-rich repeats, typical (most populated) subfamily IPR003591
SMART 652 675 24 SM00369 none Leucine-rich repeats, typical (most populated) subfamily IPR003591
Phobius 741 764 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 22 69 48 PF08263 none Leucine rich repeat N-terminal domain IPR013210
PANTHER 115 268 154 PTHR24420 none none none
PANTHER 4 83 80 PTHR24420 none none none
PANTHER 297 346 50 PTHR24420 none none none
PANTHER 368 432 65 PTHR24420 none none none
PANTHER 639 764 126 PTHR24420 none none none

4 Localization

Analysis Start End Length
SignalP_EUK 1 19 18
TMHMM 741 763 22
SignalP_GRAM_NEGATIVE 1 19 18
SignalP_GRAM_POSITIVE 1 21 20

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 19   Secretory pathway 1 0.949 0.036 NON-PLANT 19