Protein : Qrob_P0138800.2 Q. robur
Protein Identifier  ? Qrob_P0138800.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=27) PF12776 - Myb/SANT-like DNA-binding domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 789  
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Protein Sequence Displayer

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0 Synonyms

0 GO Terms

12 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_040985 1 785 + 785 Gaps:7 100.00 778 65.30 0.0 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_006G016600g 1 786 + 786 Gaps:12 97.17 813 63.29 0.0 hypothetical protein
blastp_kegg lcl|gmx:100785875 1 788 + 788 Gaps:23 100.00 789 61.47 0.0 uncharacterized LOC100785875
blastp_kegg lcl|cam:101500085 1 785 + 785 Gaps:66 100.00 845 57.87 0.0 uncharacterized LOC101500085
blastp_kegg lcl|tcc:TCM_036890 22 784 + 763 Gaps:32 97.92 771 34.17 3e-132 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0920750 22 784 + 763 Gaps:44 97.52 766 33.60 5e-129 hypothetical protein
blastp_kegg lcl|pop:POPTR_0006s28170g 8 784 + 777 Gaps:100 97.37 760 40.54 4e-124 POPTRDRAFT_763609 hypothetical protein
blastp_kegg lcl|pxb:103953458 22 786 + 765 Gaps:55 99.74 762 33.55 1e-122 uncharacterized LOC103953458
blastp_kegg lcl|pmum:103320717 20 784 + 765 Gaps:59 97.68 776 34.83 7e-122 uncharacterized LOC103320717
blastp_kegg lcl|pper:PRUPE_ppa001711mg 20 784 + 765 Gaps:64 97.68 775 35.14 8e-122 hypothetical protein
blastp_uniprot_sprot sp|O82368|Y2988_ARATH 14 774 + 761 Gaps:27 95.13 308 27.65 1e-12 Uncharacterized protein At2g29880 OS Arabidopsis thaliana GN At2g29880 PE 2 SV 1
rpsblast_cdd gnl|CDD|193252 22 599 + 578 Gaps:4 100.00 96 50.00 8e-22 pfam12776 Myb_DNA-bind_3 Myb/SANT-like DNA-binding domain. This presumed domain appears to be related to other Myb/SANT like DNA binding domains. In particular pfam10545 seems most related. This family is greatly expanded in plants and appears in several proteins annotated as transposon proteins.

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 502 780 279 PTHR31704 none none none
Pfam 505 599 95 PF12776 none Myb/SANT-like DNA-binding domain IPR024752
Pfam 186 280 95 PF12776 none Myb/SANT-like DNA-binding domain IPR024752
Pfam 337 433 97 PF12776 none Myb/SANT-like DNA-binding domain IPR024752
Pfam 22 115 94 PF12776 none Myb/SANT-like DNA-binding domain IPR024752
PANTHER 502 780 279 PTHR31704:SF4 none none none
Coils 388 409 22 Coil none none none

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting