Protein : Qrob_P0137470.2 Q. robur
Protein Identifier  ? Qrob_P0137470.2 Organism . Name  Quercus robur
Score  46.5 Score Type  egn
Protein Description  (M=1) K09015 - Fe-S cluster assembly protein SufD Gene Prediction Quality  validated
Protein length 

Sequence

Length: 483  
Kegg Orthology  K09015
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0016226 iron-sulfur cluster assembly The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster.

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103426390 1 482 + 482 Gaps:12 99.79 483 76.14 0.0 protein ABCI7 chloroplastic
blastp_kegg lcl|pxb:103940316 1 482 + 482 Gaps:11 99.79 482 75.47 0.0 protein ABCI7 chloroplastic
blastp_kegg lcl|pper:PRUPE_ppa004982mg 1 481 + 481 Gaps:13 100.00 482 77.59 0.0 hypothetical protein
blastp_kegg lcl|pmum:103343082 1 481 + 481 Gaps:14 100.00 483 76.81 0.0 protein ABCI7 chloroplastic
blastp_kegg lcl|csv:101222108 1 481 + 481 Gaps:15 100.00 496 73.99 0.0 protein ABCI7 chloroplastic-like
blastp_kegg lcl|cmo:103503519 1 481 + 481 Gaps:22 100.00 503 72.56 0.0 protein ABCI7 chloroplastic-like
blastp_kegg lcl|cit:102615744 1 477 + 477 Gaps:18 98.97 486 72.97 0.0 protein ABCI7 chloroplastic-like
blastp_kegg lcl|fve:101292430 1 475 + 475 Gaps:12 99.37 478 72.00 0.0 protein ABCI7 chloroplastic-like
blastp_kegg lcl|tcc:TCM_015750 1 482 + 482 Gaps:12 85.31 572 70.90 0.0 Non-intrinsic ABC protein 6 isoform 1
blastp_kegg lcl|vvi:100260803 1 482 + 482 Gaps:10 96.97 495 71.25 0.0 protein ABCI7 chloroplastic-like
blastp_pdb 2zu0_B 81 465 + 385 Gaps:19 87.47 423 27.84 1e-32 mol:protein length:423 Protein sufD
blastp_pdb 2zu0_A 81 465 + 385 Gaps:19 87.47 423 27.84 1e-32 mol:protein length:423 Protein sufD
blastp_pdb 1vh4_B 81 465 + 385 Gaps:19 85.06 435 27.84 2e-32 mol:protein length:435 SufD protein
blastp_pdb 1vh4_A 81 465 + 385 Gaps:19 85.06 435 27.84 2e-32 mol:protein length:435 SufD protein
blastp_uniprot_sprot sp|Q9LQK7|AB7I_ARATH 15 474 + 460 Gaps:5 97.47 475 64.79 0.0 Protein ABCI7 chloroplastic OS Arabidopsis thaliana GN ABCI7 PE 1 SV 1
blastp_uniprot_sprot sp|Q55792|Y076_SYNY3 54 459 + 406 Gaps:25 90.29 453 33.50 1e-62 UPF0051 protein slr0076 OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN slr0076 PE 3 SV 1
blastp_uniprot_sprot sp|P77689|SUFD_ECOLI 81 465 + 385 Gaps:19 87.47 423 27.84 5e-32 FeS cluster assembly protein SufD OS Escherichia coli (strain K12) GN sufD PE 1 SV 1
blastp_uniprot_sprot sp|Q9ZS97|AB8I_ARATH 161 481 + 321 Gaps:24 56.55 557 24.44 5e-17 UPF0051 protein ABCI8 chloroplastic OS Arabidopsis thaliana GN ABCI8 PE 2 SV 1
blastp_uniprot_sprot sp|O32162|SUFB_BACSU 190 459 + 270 Gaps:8 56.34 465 24.81 2e-16 FeS cluster assembly protein SufB OS Bacillus subtilis (strain 168) GN sufB PE 3 SV 1
blastp_uniprot_sprot sp|P67126|Y1496_MYCBO 256 459 + 204 Gaps:1 24.00 846 26.11 9e-15 UPF0051 protein Mb1496 OS Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN Mb1496 PE 3 SV 1
blastp_uniprot_sprot sp|P67125|Y1461_MYCTU 256 459 + 204 Gaps:1 24.00 846 26.11 9e-15 UPF0051 protein Rv1461/MT1508 OS Mycobacterium tuberculosis GN Rv1461 PE 3 SV 1
blastp_uniprot_sprot sp|Q49689|Y593_MYCLE 182 459 + 278 Gaps:9 30.96 869 24.91 1e-14 UPF0051 protein ML0593 OS Mycobacterium leprae (strain TN) GN ML0593 PE 3 SV 2
blastp_uniprot_sprot sp|Q8CTA3|Y610_STAES 190 459 + 270 Gaps:8 56.34 465 22.90 2e-14 UPF0051 protein SE_0610 OS Staphylococcus epidermidis (strain ATCC 12228) GN SE_0610 PE 3 SV 1
blastp_uniprot_sprot sp|Q5HQP8|Y500_STAEQ 190 471 + 282 Gaps:8 58.92 465 22.63 3e-14 UPF0051 protein SERP0500 OS Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN SERP0500 PE 3 SV 1
rpsblast_cdd gnl|CDD|144885 223 450 + 228 Gaps:2 98.26 230 39.38 2e-59 pfam01458 UPF0051 Uncharacterized protein family (UPF0051).
rpsblast_cdd gnl|CDD|188188 188 465 + 278 Gaps:10 97.45 275 35.45 4e-59 TIGR01981 sufD FeS assembly protein SufD. This protein SufD forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system together with SufA is believed to act in iron-sulfur cluster formation during oxidative stress. SufB and SufD are homologous. Note that SufC belongs to the family of ABC transporter ATP binding proteins so this protein encoded by an adjacent gene has often been annotated as a transporter component.
rpsblast_cdd gnl|CDD|31063 128 465 + 338 Gaps:9 79.85 412 29.79 1e-51 COG0719 SufB ABC-type transport system involved in Fe-S cluster assembly permease component [Posttranslational modification protein turnover chaperones].
rpsblast_cdd gnl|CDD|182859 76 474 + 399 Gaps:30 90.80 424 30.39 2e-39 PRK10948 PRK10948 cysteine desulfurase activator complex subunit SufD Provisional.
rpsblast_cdd gnl|CDD|131035 178 459 + 282 Gaps:8 61.16 448 25.91 2e-20 TIGR01980 sufB FeS assembly protein SufB. This protein SufB forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system together with SufA is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins so this protein encoded by an adjacent gene has often been annotated as a transporter component.
rpsblast_cdd gnl|CDD|177024 372 481 + 110 Gaps:4 21.86 485 35.85 3e-10 CHL00085 ycf24 putative ABC transporter.

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
TIGRFAM 189 463 275 TIGR01981 none sufD: FeS assembly protein SufD IPR011542
PANTHER 13 479 467 PTHR30508:SF3 none none none
SUPERFAMILY 62 474 413 SSF101960 none none none
Pfam 223 450 228 PF01458 none Uncharacterized protein family (UPF0051) IPR000825
PANTHER 13 479 467 PTHR30508 none none none

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5

0 Targeting