Protein : Qrob_P0137100.2 Q. robur
Protein Identifier  ? Qrob_P0137100.2 Organism . Name  Quercus robur
Score  58.2 Score Type  egn
Protein Description  (M=3) PF09402 - Man1-Src1p-C-terminal domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 282  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005639 integral component of nuclear inner membrane The component of the nuclear inner membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.

11 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_0519470 1 271 + 271 Gaps:8 70.51 373 56.65 5e-105 hypothetical protein
blastp_kegg lcl|tcc:TCM_015783 27 271 + 245 Gaps:1 62.89 388 62.30 1e-104 Uncharacterized protein isoform 1
blastp_kegg lcl|cit:102629601 27 271 + 245 Gaps:1 62.12 396 61.79 4e-103 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10031769mg 27 271 + 245 Gaps:1 62.92 391 61.79 8e-103 hypothetical protein
blastp_kegg lcl|pxb:103961103 24 271 + 248 Gaps:8 62.78 395 57.26 3e-100 uncharacterized LOC103961103
blastp_kegg lcl|pop:POPTR_0001s02940g 1 271 + 271 Gaps:2 70.05 384 57.25 3e-99 hypothetical protein
blastp_kegg lcl|mdm:103420170 24 271 + 248 Gaps:8 62.78 395 56.85 3e-97 uncharacterized LOC103420170
blastp_kegg lcl|csv:101208017 23 271 + 249 Gaps:2 61.63 404 57.43 5e-94 uncharacterized LOC101208017
blastp_kegg lcl|pmum:103328907 22 271 + 250 Gaps:30 66.19 420 51.80 1e-93 uncharacterized LOC103328907
blastp_kegg lcl|pper:PRUPE_ppa020378mg 20 271 + 252 Gaps:3 66.05 380 55.78 2e-93 hypothetical protein
rpsblast_cdd gnl|CDD|204230 60 271 + 212 Gaps:39 75.15 326 19.18 6e-11 pfam09402 MSC Man1-Src1p-C-terminal domain. MAN1 is an integral protein of the inner nuclear membrane which binds to chromatin associated proteins and plays a role in nuclear organisation. The C terminal nucleoplasmic region forms a DNA binding winged helix and binds to Smad. This C-terminal tail is also found in S. cerevisiae and is thought to consist of three conserved helices followed by two downstream strands.

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 58 271 214 PF09402 none Man1-Src1p-C-terminal domain IPR018996
Phobius 1 40 40 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 41 65 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 230 248 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 249 281 33 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 66 229 164 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

3 Localization

Analysis Start End Length
TMHMM 41 63 22
SignalP_GRAM_POSITIVE 1 10 9
TMHMM 225 247 22

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 19   Mitochondrion 2 0.052 0.877 NON-PLANT 19