Protein : Qrob_P0136630.2 Q. robur
Protein Identifier  ? Qrob_P0136630.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K12192 - charged multivesicular body protein 2B Gene Prediction Quality  validated
Protein length 

Sequence

Length: 154  
Kegg Orthology  K12192
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0007034 vacuolar transport The directed movement of substances into, out of or within a vacuole.

29 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103445600 2 145 + 144 Gaps:51 92.42 211 68.72 1e-78 vacuolar protein sorting-associated protein 2 homolog 3-like
blastp_kegg lcl|pxb:103958858 2 145 + 144 Gaps:51 91.98 212 68.21 5e-78 vacuolar protein sorting-associated protein 2 homolog 3-like
blastp_kegg lcl|mdm:103435723 2 145 + 144 Gaps:51 92.42 211 68.21 1e-77 vacuolar protein sorting-associated protein 2 homolog 3-like
blastp_kegg lcl|pper:PRUPE_ppa010873mg 2 147 + 146 Gaps:51 84.91 232 67.01 5e-77 hypothetical protein
blastp_kegg lcl|pmum:103334447 2 142 + 141 Gaps:51 90.57 212 68.75 2e-76 vacuolar protein sorting-associated protein 2 homolog 3
blastp_kegg lcl|fve:101293447 2 142 + 141 Gaps:51 90.57 212 68.23 2e-76 vacuolar protein sorting-associated protein 2 homolog 3-like
blastp_kegg lcl|pxb:103928768 2 145 + 144 Gaps:51 92.42 211 67.69 3e-76 vacuolar protein sorting-associated protein 2 homolog 3-like
blastp_kegg lcl|vvi:100242937 2 151 + 150 Gaps:52 95.28 212 65.84 6e-76 vacuolar protein sorting-associated protein 2 homolog 3-like
blastp_kegg lcl|gmx:100306343 2 145 + 144 Gaps:51 91.98 212 66.15 4e-75 uncharacterized LOC100306343
blastp_kegg lcl|cmo:103489723 2 145 + 144 Gaps:51 91.98 212 66.67 5e-75 vacuolar protein sorting-associated protein 2 homolog 3
blastp_pdb 3frv_A 2 86 + 85 Gaps:4 57.24 152 32.18 1e-06 mol:protein length:152 Charged multivesicular body protein 3
blastp_pdb 2gd5_D 5 86 + 82 Gaps:1 45.25 179 30.86 6e-06 mol:protein length:179 Charged multivesicular body protein 3
blastp_pdb 2gd5_C 5 86 + 82 Gaps:1 45.25 179 30.86 6e-06 mol:protein length:179 Charged multivesicular body protein 3
blastp_pdb 2gd5_B 5 86 + 82 Gaps:1 45.25 179 30.86 6e-06 mol:protein length:179 Charged multivesicular body protein 3
blastp_pdb 2gd5_A 5 86 + 82 Gaps:1 45.25 179 30.86 6e-06 mol:protein length:179 Charged multivesicular body protein 3
blastp_uniprot_sprot sp|Q941D5|VPS2C_ARATH 2 151 + 150 Gaps:52 96.19 210 61.88 8e-72 Vacuolar protein sorting-associated protein 2 homolog 3 OS Arabidopsis thaliana GN VPS2.3 PE 2 SV 1
blastp_uniprot_sprot sp|Q0WTY4|VPS2B_ARATH 2 139 + 138 Gaps:51 85.14 222 60.32 1e-65 Vacuolar protein sorting-associated protein 2 homolog 2 OS Arabidopsis thaliana GN VPS2.2 PE 1 SV 2
blastp_uniprot_sprot sp|Q9SKI2|VPS2A_ARATH 1 137 + 137 Gaps:52 84.00 225 34.39 9e-24 Vacuolar protein sorting-associated protein 2 homolog 1 OS Arabidopsis thaliana GN VPS2.1 PE 1 SV 2
blastp_uniprot_sprot sp|Q54DB1|CM2A2_DICDI 2 132 + 131 Gaps:51 91.92 198 33.52 2e-20 Charged multivesicular body protein 2a homolog 2 OS Dictyostelium discoideum GN chmp2a2 PE 3 SV 1
blastp_uniprot_sprot sp|Q6NXD2|CHM2B_DANRE 1 145 + 145 Gaps:54 90.19 214 31.09 7e-16 Charged multivesicular body protein 2b OS Danio rerio GN chmp2b PE 2 SV 1
blastp_uniprot_sprot sp|Q7ZW25|CHM2A_DANRE 1 132 + 132 Gaps:51 83.18 220 30.05 3e-15 Charged multivesicular body protein 2a OS Danio rerio GN chmp2a PE 2 SV 1
blastp_uniprot_sprot sp|Q6IP52|CHM2A_XENLA 4 132 + 129 Gaps:51 81.82 220 30.56 4e-15 Charged multivesicular body protein 2a OS Xenopus laevis GN chmp2a PE 2 SV 1
blastp_uniprot_sprot sp|Q6DFS6|CHM2A_XENTR 4 132 + 129 Gaps:51 81.82 220 30.56 5e-15 Charged multivesicular body protein 2a OS Xenopus tropicalis GN chmp2a PE 2 SV 1
blastp_uniprot_sprot sp|Q66IV6|CH2BB_XENLA 1 132 + 132 Gaps:52 85.05 214 27.47 1e-14 Charged multivesicular body protein 2b-B OS Xenopus laevis GN chmp2b-b PE 2 SV 1
blastp_uniprot_sprot sp|P36108|DID4_YEAST 4 137 + 134 Gaps:52 80.17 232 27.96 1e-14 DOA4-independent degradation protein 4 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN DID4 PE 1 SV 2
rpsblast_cdd gnl|CDD|146145 17 115 + 99 Gaps:24 72.78 169 24.39 1e-11 pfam03357 Snf7 Snf7. This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins such as activated cell surface receptors to the lumen of the vacuole/lysosome either for degradation/downregulation or in the case of hydrolases for proper localisation requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family.
rpsblast_kog gnl|CDD|38440 2 141 + 140 Gaps:51 85.27 224 36.13 3e-30 KOG3230 KOG3230 KOG3230 Vacuolar assembly/sorting protein DID4 [Intracellular trafficking secretion and vesicular transport].
rpsblast_kog gnl|CDD|38441 2 135 + 134 Gaps:52 88.46 208 28.80 2e-12 KOG3231 KOG3231 KOG3231 Predicted assembly/vacuolar sorting protein [Intracellular trafficking secretion and vesicular transport].
rpsblast_kog gnl|CDD|38439 2 92 + 91 none 40.09 227 26.37 9e-08 KOG3229 KOG3229 KOG3229 Vacuolar sorting protein VPS24 [Intracellular trafficking secretion and vesicular transport].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 2 144 143 PTHR10476:SF8 none none none
Pfam 17 113 97 PF03357 none Snf7 IPR005024
PANTHER 2 144 143 PTHR10476 none none none

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting