Protein : Qrob_P0135090.2 Q. robur

Protein Identifier  ? Qrob_P0135090.2 Organism . Name  Quercus robur
Score  90.1 Score Type  egn
Protein Description  (M=1) PTHR31062:SF15 - XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 4-RELATED (PTHR31062:SF15) Code Enzyme  EC:2.4.1.207
Gene Prediction Quality  validated Protein length 

Sequence

Length: 294  
Kegg Orthology  K08235

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

8 GO Terms

Identifier Name Description
GO:0005618 cell wall The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
GO:0010411 xyloglucan metabolic process The chemical reactions and pathways involving xyloglucan, the cross-linking glycan composed of (1->4)-beta-D-glucan backbone substituted at regular intervals with beta-D-xylosyl-(1->6) residues, which is present in the primary cell wall of most higher plants.
GO:0006073 cellular glucan metabolic process The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues.
GO:0016762 xyloglucan:xyloglucosyl transferase activity Catalysis of the cleavage of a beta-(1->4) bond in the backbone of a xyloglucan and transfers the xyloglucanyl segment on to O-4 of the non-reducing terminal glucose residue of an acceptor, which can be a xyloglucan or an oligosaccharide of xyloglucan.
GO:0048046 apoplast The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it.
GO:0042546 cell wall biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cell wall. Includes biosynthesis of constituent macromolecules, such as proteins and polysaccharides, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102617022 1 293 + 293 none 91.85 319 90.10 0.0 probable xyloglucan endotransglucosylase/hydrolase protein B-like
blastp_kegg lcl|cic:CICLE_v10028851mg 1 293 + 293 none 91.85 319 90.10 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0001s12640g 1 293 + 293 none 100.00 293 90.44 0.0 POPTRDRAFT_708892 EXGT1 family protein
blastp_kegg lcl|rcu:RCOM_1438910 1 292 + 292 Gaps:1 91.85 319 90.10 0.0 Xyloglucan endotransglucosylase/hydrolase protein A precursor putative (EC:2.4.1.207)
blastp_kegg lcl|pop:POPTR_0003s15800g 2 293 + 292 none 99.32 294 88.70 0.0 POPTRDRAFT_712150 EXGT1 family protein
blastp_kegg lcl|pmum:103322182 1 293 + 293 Gaps:1 100.00 294 88.44 0.0 probable xyloglucan endotransglucosylase/hydrolase protein B
blastp_kegg lcl|tcc:TCM_003190 1 293 + 293 none 75.52 388 89.08 0.0 Xyloglucan endotransglucosylase/hydrolase 4
blastp_kegg lcl|pper:PRUPE_ppa009387mg 1 293 + 293 Gaps:1 100.00 294 88.44 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10016123mg 1 293 + 293 none 100.00 293 85.67 0.0 hypothetical protein
blastp_kegg lcl|cit:102613907 1 293 + 293 none 100.00 293 85.67 0.0 probable xyloglucan endotransglucosylase/hydrolase protein 5-like
blastp_pdb 1un1_B 19 293 + 275 none 98.92 278 90.18 0.0 mol:protein length:278 XYLOGLUCAN ENDOTRANSGLYCOSYLASE
blastp_pdb 1un1_A 19 293 + 275 none 98.92 278 90.18 0.0 mol:protein length:278 XYLOGLUCAN ENDOTRANSGLYCOSYLASE
blastp_pdb 1umz_B 19 293 + 275 none 98.92 278 90.18 0.0 mol:protein length:278 XYLOGLUCAN ENDOTRANSGLYCOSYLASE
blastp_pdb 1umz_A 19 293 + 275 none 98.92 278 90.18 0.0 mol:protein length:278 XYLOGLUCAN ENDOTRANSGLYCOSYLASE
blastp_pdb 2vh9_B 9 287 + 279 Gaps:22 96.21 290 40.86 3e-62 mol:protein length:290 CELLULASE
blastp_pdb 2vh9_A 9 287 + 279 Gaps:22 96.21 290 40.86 3e-62 mol:protein length:290 CELLULASE
blastp_pdb 2uwb_B 23 287 + 265 Gaps:14 96.25 267 41.63 4e-61 mol:protein length:267 CELLULASE
blastp_pdb 2uwb_A 23 287 + 265 Gaps:14 96.25 267 41.63 4e-61 mol:protein length:267 CELLULASE
blastp_pdb 2uwc_B 23 287 + 265 Gaps:19 96.68 271 41.22 5e-59 mol:protein length:271 CELLULASE
blastp_pdb 2uwc_A 23 287 + 265 Gaps:19 96.68 271 41.22 5e-59 mol:protein length:271 CELLULASE
blastp_uniprot_sprot sp|Q8LNZ5|XTHB_PHAAN 1 293 + 293 none 100.00 293 82.59 0.0 Probable xyloglucan endotransglucosylase/hydrolase protein B OS Phaseolus angularis GN XTHB PE 2 SV 1
blastp_uniprot_sprot sp|Q9XIW1|XTH5_ARATH 1 293 + 293 none 100.00 293 80.89 0.0 Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS Arabidopsis thaliana GN XTH5 PE 2 SV 1
blastp_uniprot_sprot sp|Q41638|XTHA_PHAAN 1 293 + 293 Gaps:1 100.00 292 83.22 0.0 Xyloglucan endotransglucosylase/hydrolase protein A OS Phaseolus angularis GN XTHA PE 1 SV 1
blastp_uniprot_sprot sp|Q39857|XTH_SOYBN 5 293 + 289 Gaps:1 98.31 295 84.48 0.0 Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS Glycine max GN XTH PE 2 SV 1
blastp_uniprot_sprot sp|Q6YDN9|XTH_BRAOB 1 293 + 293 none 99.32 295 78.16 2e-178 Xyloglucan endotransglucosylase/hydrolase OS Brassica oleracea var. botrytis GN XET16A PE 1 SV 1
blastp_uniprot_sprot sp|Q39099|XTH4_ARATH 1 292 + 292 Gaps:1 98.99 296 77.82 6e-177 Xyloglucan endotransglucosylase/hydrolase protein 4 OS Arabidopsis thaliana GN XTH4 PE 1 SV 1
blastp_uniprot_sprot sp|Q41542|XTH_WHEAT 19 293 + 275 none 93.86 293 81.45 8e-174 Probable xyloglucan endotransglucosylase/hydrolase OS Triticum aestivum GN XTH PE 2 SV 1
blastp_uniprot_sprot sp|P93349|XTH_TOBAC 18 293 + 276 Gaps:2 94.24 295 77.70 3e-163 Probable xyloglucan endotransglucosylase/hydrolase protein OS Nicotiana tabacum GN XTH PE 2 SV 1
blastp_uniprot_sprot sp|Q40144|XTH1_SOLLC 8 293 + 286 Gaps:8 99.32 296 71.09 2e-157 Probable xyloglucan endotransglucosylase/hydrolase 1 OS Solanum lycopersicum GN XTH1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8LF99|XTH6_ARATH 3 288 + 286 Gaps:4 97.26 292 51.76 4e-103 Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS Arabidopsis thaliana GN XTH6 PE 2 SV 2

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 33 213 181 PF00722 none Glycosyl hydrolases family 16 IPR000757
SUPERFAMILY 29 291 263 SSF49899 none none IPR013320
PIRSF 1 292 292 PIRSF005604 none none IPR016455
PANTHER 12 293 282 PTHR31062 none none none
Phobius 1 21 21 SIGNAL_PEPTIDE none Signal peptide region none
ProSitePatterns 106 116 11 PS01034 none Glycosyl hydrolases family 16 active sites. IPR008263
PANTHER 12 293 282 PTHR31062:SF15 none none none
Phobius 1 3 3 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Pfam 237 287 51 PF06955 none Xyloglucan endo-transglycosylase (XET) C-terminus IPR010713
Phobius 15 21 7 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 22 293 272 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 26 290 265 G3DSA:2.60.120.200 none none IPR013320
Phobius 4 14 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none

3 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 21 20
SignalP_EUK 1 21 20
TMHMM 2 24 22

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 21   Secretory pathway 1 0.928 0.068 NON-PLANT 21