Protein : Qrob_P0133680.2 Q. robur

Protein Identifier  ? Qrob_P0133680.2 Organism . Name  Quercus robur
Score  98.2 Score Type  egn
Protein Description  (M=1) PF05859 - Mis12 protein Gene Prediction Quality  validated
Protein length 

Sequence

Length: 186  

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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0007067 mitotic nuclear division A cell cycle process comprising the steps by which the nucleus of a eukaryotic cell divides; the process involves condensation of chromosomal DNA into a highly compacted form. Canonically, mitosis produces two daughter nuclei whose chromosome complement is identical to that of the mother cell.
GO:0000775 chromosome, centromeric region The region of a chromosome that includes the centromeric DNA and associated proteins. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome.
GO:0007049 cell cycle The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.

11 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100267948 9 183 + 175 Gaps:1 71.31 244 63.79 5e-74 uncharacterized LOC100267948
blastp_kegg lcl|cic:CICLE_v10021913mg 9 183 + 175 Gaps:1 71.31 244 63.22 1e-73 hypothetical protein
blastp_kegg lcl|cit:102611993 9 183 + 175 Gaps:1 71.31 244 63.22 1e-73 uncharacterized LOC102611993
blastp_kegg lcl|pop:POPTR_0015s06590g 9 183 + 175 Gaps:2 71.19 243 66.47 1e-72 hypothetical protein
blastp_kegg lcl|tcc:TCM_014455 9 183 + 175 Gaps:1 71.31 244 61.49 3e-70 Minichromosome instability 12-like putative
blastp_kegg lcl|fve:101315349 9 183 + 175 Gaps:1 71.31 244 59.77 9e-68 uncharacterized protein LOC101315349
blastp_kegg lcl|csv:101210006 1 183 + 183 Gaps:7 73.95 238 64.20 5e-67 uncharacterized LOC101210006
blastp_kegg lcl|pper:PRUPE_ppa020456mg 9 183 + 175 Gaps:2 71.19 243 61.27 5e-64 hypothetical protein
blastp_kegg lcl|pmum:103342242 9 183 + 175 Gaps:2 71.19 243 61.27 9e-64 uncharacterized LOC103342242
blastp_kegg lcl|pda:103702883 4 183 + 180 Gaps:4 73.03 241 56.82 2e-62 uncharacterized LOC103702883
rpsblast_cdd gnl|CDD|191391 12 145 + 134 Gaps:6 97.87 141 24.64 3e-13 pfam05859 Mis12 Mis12 protein. Kinetochores are the chromosomal sites for spindle interaction and play a vital role in chromosome segregation. Fission yeast kinetochore protein Mis12 is required for correct spindle morphogenesis determining metaphase spindle length. Thirty-five to sixty percent extension of metaphase spindle length takes place in Mis12 mutants. It has been shown that Mis12 genetically interacts with Mal2 another inner centromere core complex protein in S. pombe.

1 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 13 146 134 PF05859 none Mis12 protein IPR008685

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting