Protein : Qrob_P0131300.2 Q. robur
Protein Identifier  ? Qrob_P0131300.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=11) PTHR22849//PTHR22849:SF7 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMED Code Enzyme  EC:6.3.2.19
Gene Prediction Quality  validated Protein length 

Sequence

Length: 405  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0004842 ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
GO:0016567 protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.

26 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0006s21920g 1 398 + 398 Gaps:1 97.56 409 71.18 0.0 POPTRDRAFT_561153 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0418900 1 398 + 398 Gaps:1 99.01 403 71.18 0.0 Spotted leaf protein putative
blastp_kegg lcl|mdm:103421753 1 398 + 398 Gaps:1 99.01 403 67.17 0.0 E3 ubiquitin-protein ligase PUB24-like
blastp_kegg lcl|pper:PRUPE_ppa019526mg 1 398 + 398 Gaps:1 99.01 403 65.66 0.0 hypothetical protein
blastp_kegg lcl|pmum:103339538 1 401 + 401 Gaps:1 98.29 409 64.93 0.0 E3 ubiquitin-protein ligase PUB24
blastp_kegg lcl|pxb:103940528 1 398 + 398 Gaps:1 99.01 403 66.67 0.0 E3 ubiquitin-protein ligase PUB24
blastp_kegg lcl|mdm:103454167 1 394 + 394 Gaps:1 98.01 403 67.09 0.0 E3 ubiquitin-protein ligase PUB24
blastp_kegg lcl|mdm:103414926 1 394 + 394 Gaps:1 98.01 403 66.84 0.0 E3 ubiquitin-protein ligase PUB24-like
blastp_kegg lcl|pop:POPTR_0016s07020g 1 398 + 398 none 97.55 408 67.34 0.0 POPTRDRAFT_576498 U-box domain-containing family protein
blastp_kegg lcl|fve:101304017 2 395 + 394 Gaps:3 96.83 410 65.99 0.0 E3 ubiquitin-protein ligase PUB24-like
blastp_pdb 1t1h_A 5 79 + 75 Gaps:2 93.59 78 50.68 4e-15 mol:protein length:78 armadillo repeat containing protein
blastp_pdb 2f42_A 5 79 + 75 Gaps:2 40.78 179 38.36 4e-06 mol:protein length:179 STIP1 homology and U-box containing protein 1
blastp_pdb 2oxq_D 5 74 + 70 Gaps:2 85.00 80 39.71 5e-06 mol:protein length:80 STIP1 homology and U-Box containing protein 1
blastp_pdb 2oxq_C 5 74 + 70 Gaps:2 85.00 80 39.71 5e-06 mol:protein length:80 STIP1 homology and U-Box containing protein 1
blastp_uniprot_sprot sp|Q9SF15|PUB24_ARATH 2 395 + 394 Gaps:51 94.96 456 45.27 2e-121 E3 ubiquitin-protein ligase PUB24 OS Arabidopsis thaliana GN PUB24 PE 1 SV 1
blastp_uniprot_sprot sp|Q84TG3|PUB23_ARATH 2 395 + 394 Gaps:16 95.86 411 41.62 1e-97 E3 ubiquitin-protein ligase PUB23 OS Arabidopsis thaliana GN PUB23 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SVC6|PUB22_ARATH 1 395 + 395 Gaps:40 97.70 435 38.12 2e-88 E3 ubiquitin-protein ligase PUB22 OS Arabidopsis thaliana GN PUB22 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LT79|PUB25_ARATH 4 370 + 367 Gaps:25 87.89 421 30.27 6e-39 U-box domain-containing protein 25 OS Arabidopsis thaliana GN PUB25 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C8D1|PUB20_ARATH 3 382 + 380 Gaps:48 86.31 431 32.80 4e-37 U-box domain-containing protein 20 OS Arabidopsis thaliana GN PUB20 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FXA4|PUB26_ARATH 4 395 + 392 Gaps:21 94.30 421 27.46 4e-32 U-box domain-containing protein 26 OS Arabidopsis thaliana GN PUB26 PE 2 SV 1
blastp_uniprot_sprot sp|Q5PNY6|PUB21_ARATH 3 382 + 380 Gaps:25 87.59 435 28.08 1e-26 U-box domain-containing protein 21 OS Arabidopsis thaliana GN PUB21 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LSA6|PUB29_ARATH 4 382 + 379 Gaps:32 92.29 415 28.20 2e-24 U-box domain-containing protein 29 OS Arabidopsis thaliana GN PUB29 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LXE3|PUB28_ARATH 6 382 + 377 Gaps:22 91.69 409 26.93 3e-23 U-box domain-containing protein 28 OS Arabidopsis thaliana GN PUB28 PE 1 SV 1
blastp_uniprot_sprot sp|Q9FLF4|PUB27_ARATH 4 390 + 387 Gaps:60 93.57 420 25.70 5e-20 U-box domain-containing protein 27 OS Arabidopsis thaliana GN PUB27 PE 2 SV 1
rpsblast_cdd gnl|CDD|128780 9 74 + 66 Gaps:3 100.00 63 53.97 2e-18 smart00504 Ubox Modified RING finger domain. Modified RING finger domain without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
rpsblast_cdd gnl|CDD|203049 6 74 + 69 Gaps:2 91.78 73 49.25 5e-15 pfam04564 U-box U-box domain. This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues.

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 5 75 71 G3DSA:3.30.40.10 none none IPR013083
SMART 9 74 66 SM00504 "UniPathway:UPA00143" Modified RING finger domain IPR003613
SUPERFAMILY 99 372 274 SSF48371 none none IPR016024
PANTHER 4 395 392 PTHR22849:SF7 none none none
PANTHER 4 395 392 PTHR22849 none none none
SUPERFAMILY 4 81 78 SSF57850 none none none
ProSiteProfiles 5 81 77 PS51698 "UniPathway:UPA00143" U-box domain profile. IPR003613
Pfam 6 75 70 PF04564 "UniPathway:UPA00143" U-box domain IPR003613
Gene3D 99 383 285 G3DSA:1.25.10.10 none none IPR011989

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

0 Targeting