Protein : Qrob_P0131200.2 Q. robur
Protein Identifier  ? Qrob_P0131200.2 Organism . Name  Quercus robur
Score  97.0 Score Type  egn
Protein Description  (M=1) PTHR18934:SF100 - ATP-DEPENDENT RNA HELICASE DHX30-RELATED (PTHR18934:SF100) Code Enzyme  EC:3.6.4.13
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1067  
Kegg Orthology  K14442
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0008026 ATP-dependent helicase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO:0004386 helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103935215 82 1066 + 985 Gaps:88 92.33 1043 83.18 0.0 ATP-dependent RNA helicase DHX36
blastp_kegg lcl|cmo:103486685 1 1066 + 1066 Gaps:91 100.00 1029 81.24 0.0 ATP-dependent RNA helicase DHX36
blastp_kegg lcl|vvi:100252028 82 1064 + 983 Gaps:81 96.47 991 83.58 0.0 probable ATP-dependent RNA helicase DHX36-like
blastp_kegg lcl|csv:101208686 82 1066 + 985 Gaps:80 95.90 1000 82.59 0.0 probable ATP-dependent RNA helicase DHX36-like
blastp_kegg lcl|pper:PRUPE_ppa000803mg 82 1066 + 985 Gaps:83 96.39 998 83.47 0.0 hypothetical protein
blastp_kegg lcl|fve:101296686 82 1065 + 984 Gaps:81 96.60 999 81.55 0.0 probable ATP-dependent RNA helicase DHX36-like
blastp_kegg lcl|pmum:103339540 82 1066 + 985 Gaps:83 95.63 1006 83.06 0.0 ATP-dependent RNA helicase DHX36
blastp_kegg lcl|tcc:TCM_022976 36 1066 + 1031 Gaps:86 96.72 1037 81.85 0.0 RNA helicase family protein isoform 1
blastp_kegg lcl|sot:102584740 82 1066 + 985 Gaps:81 98.26 975 81.73 0.0 probable ATP-dependent RNA helicase DHX36-like
blastp_kegg lcl|gmx:100792823 12 1061 + 1050 Gaps:84 99.03 1030 79.71 0.0 probable ATP-dependent RNA helicase DHX36-like
blastp_pdb 3llm_B 279 487 + 209 Gaps:4 88.94 235 46.41 2e-57 mol:protein length:235 ATP-dependent RNA helicase A
blastp_pdb 3llm_A 279 487 + 209 Gaps:4 88.94 235 46.41 2e-57 mol:protein length:235 ATP-dependent RNA helicase A
blastp_pdb 3kx2_A 307 982 + 676 Gaps:54 79.14 767 37.07 5e-48 mol:protein length:767 Pre-mRNA-splicing factor ATP-dependent RNA he
blastp_pdb 3kx2_B 307 982 + 676 Gaps:54 79.14 767 37.07 5e-48 mol:protein length:767 Pre-mRNA-splicing factor ATP-dependent RNA he
blastp_pdb 2xau_B 307 982 + 676 Gaps:54 78.53 773 37.07 5e-48 mol:protein length:773 PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HE
blastp_pdb 2xau_A 307 982 + 676 Gaps:54 78.53 773 37.07 5e-48 mol:protein length:773 PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HE
blastp_pdb 3i4u_A 730 991 + 262 Gaps:44 87.41 270 34.75 1e-21 mol:protein length:270 ATP-dependent RNA helicase DHX8
blastp_uniprot_sprot sp|Q8VHK9|DHX36_MOUSE 269 1062 + 794 Gaps:64 82.72 1001 44.44 0.0 Probable ATP-dependent RNA helicase DHX36 OS Mus musculus GN Dhx36 PE 1 SV 2
blastp_uniprot_sprot sp|Q9H2U1|DHX36_HUMAN 304 1062 + 759 Gaps:64 78.47 1008 45.39 0.0 Probable ATP-dependent RNA helicase DHX36 OS Homo sapiens GN DHX36 PE 1 SV 2
blastp_uniprot_sprot sp|Q6P158|DHX57_HUMAN 293 1062 + 770 Gaps:110 62.34 1386 40.97 0.0 Putative ATP-dependent RNA helicase DHX57 OS Homo sapiens GN DHX57 PE 1 SV 2
blastp_uniprot_sprot sp|Q6P5D3|DHX57_MOUSE 291 1062 + 772 Gaps:95 62.32 1388 40.69 0.0 Putative ATP-dependent RNA helicase DHX57 OS Mus musculus GN Dhx57 PE 2 SV 2
blastp_uniprot_sprot sp|Q6PGC1|DHX29_MOUSE 255 1063 + 809 Gaps:79 62.42 1365 37.56 1e-164 ATP-dependent RNA helicase Dhx29 OS Mus musculus GN Dhx29 PE 2 SV 1
blastp_uniprot_sprot sp|Q7Z478|DHX29_HUMAN 261 1063 + 803 Gaps:84 62.02 1369 36.87 3e-161 ATP-dependent RNA helicase DHX29 OS Homo sapiens GN DHX29 PE 1 SV 2
blastp_uniprot_sprot sp|A3KMI0|DHX29_XENLA 308 1044 + 737 Gaps:102 57.49 1362 39.46 2e-159 ATP-dependent RNA helicase DHX29 OS Xenopus laevis GN dhx29 PE 2 SV 1
blastp_uniprot_sprot sp|Q68FK8|DHX9_XENLA 279 1040 + 762 Gaps:69 60.46 1262 39.32 5e-148 ATP-dependent RNA helicase A-like protein OS Xenopus laevis GN dhx9 PE 2 SV 1
blastp_uniprot_sprot sp|P24785|MLE_DROME 244 1047 + 804 Gaps:83 63.96 1293 37.24 7e-145 Dosage compensation regulator OS Drosophila melanogaster GN mle PE 2 SV 2
blastp_uniprot_sprot sp|Q5R874|DHX9_PONAB 242 1042 + 801 Gaps:81 63.67 1269 37.62 1e-144 ATP-dependent RNA helicase A OS Pongo abelii GN DHX9 PE 2 SV 1
rpsblast_cdd gnl|CDD|162629 287 982 + 696 Gaps:118 49.26 1283 35.28 7e-99 TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long while its paralog HrpB also uncharacterized is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
rpsblast_cdd gnl|CDD|182986 282 869 + 588 Gaps:114 41.73 1294 37.04 5e-93 PRK11131 PRK11131 ATP-dependent RNA helicase HrpA Provisional.
rpsblast_cdd gnl|CDD|31829 280 978 + 699 Gaps:64 78.22 845 39.49 1e-72 COG1643 HrpA HrpA-like helicases [DNA replication recombination and repair].

22 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 321 488 168 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
SMART 753 844 92 SM00847 none Helicase associated domain (HA2) Add an annotation IPR007502
Phobius 185 1066 882 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 216 501 286 PTHR18934:SF100 none none none
Phobius 1 156 156 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SMART 309 505 197 SM00487 none DEAD-like helicases superfamily IPR014001
Pfam 882 993 112 PF07717 none Oligonucleotide/oligosaccharide-binding (OB)-fold IPR011709
Pfam 614 690 77 PF00271 none Helicase conserved C-terminal domain IPR001650
Gene3D 310 471 162 G3DSA:3.40.50.300 none none IPR027417
SMART 586 691 106 SM00490 none helicase superfamily c-terminal domain IPR001650
PANTHER 577 1062 486 PTHR18934 none none none
PANTHER 216 501 286 PTHR18934 none none none
Pfam 753 844 92 PF04408 none Helicase associated domain (HA2) IPR007502
Gene3D 613 706 94 G3DSA:3.40.50.300 none none IPR027417
SUPERFAMILY 578 870 293 SSF52540 none none IPR027417
SUPERFAMILY 308 502 195 SSF52540 none none IPR027417
Coils 1015 1036 22 Coil none none none
PANTHER 577 1062 486 PTHR18934:SF100 none none none
ProSitePatterns 430 439 10 PS00690 none DEAH-box subfamily ATP-dependent helicases signature. IPR002464
ProSiteProfiles 534 731 198 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
Phobius 157 184 28 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 316 473 158 PF00270 none DEAD/DEAH box helicase IPR011545

1 Localization

Analysis Start End Length
TMHMM 146 168 22

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 37   Mitochondrion 2 0.016 0.896 NON-PLANT 37