Protein : Qrob_P0126770.2 Q. robur
Protein Identifier  ? Qrob_P0126770.2 Organism . Name  Quercus robur
Score  98.1 Score Type  egn
Protein Description  (M=4) 3.1.31.1 - Micrococcal nuclease. Code Enzyme  EC:3.1.31.1
Gene Prediction Quality  validated Protein length 

Sequence

Length: 337  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0004812 aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO:0006418 tRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO:0004518 nuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids.

33 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_042417 1 336 + 336 Gaps:1 100.00 335 84.78 0.0 Uncharacterized protein isoform 1
blastp_kegg lcl|rcu:RCOM_0688330 1 336 + 336 Gaps:1 100.00 335 81.79 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0008s07470g 1 336 + 336 Gaps:1 100.00 335 82.99 0.0 POPTRDRAFT_564092 Ca(2+)-dependent nuclease family protein
blastp_kegg lcl|pop:POPTR_0010s18970g 1 336 + 336 Gaps:1 100.00 335 82.39 0.0 POPTRDRAFT_567200 Ca(2+)-dependent nuclease family protein
blastp_kegg lcl|vvi:100265624 1 336 + 336 Gaps:2 100.00 334 81.44 0.0 uncharacterized LOC100265624
blastp_kegg lcl|cit:102630573 1 336 + 336 none 100.00 336 78.87 0.0 uncharacterized LOC102630573
blastp_kegg lcl|fve:101294215 1 336 + 336 Gaps:2 100.00 334 80.54 0.0 uncharacterized 38.1 kDa protein-like
blastp_kegg lcl|gmx:100795618 1 335 + 335 Gaps:1 99.70 335 79.94 0.0 uncharacterized LOC100795618
blastp_kegg lcl|pvu:PHAVU_008G219500g 1 334 + 334 Gaps:1 99.40 335 78.98 0.0 hypothetical protein
blastp_kegg lcl|pxb:103942214 1 336 + 336 Gaps:3 99.12 340 76.85 0.0 staphylococcal-like nuclease CAN2
blastp_pdb 3d8g_A 225 323 + 99 Gaps:10 74.83 143 30.84 2e-06 mol:protein length:143 Thermonuclease
blastp_pdb 1snd_B 225 323 + 99 Gaps:12 74.83 143 31.78 3e-06 mol:protein length:143 STAPHYLOCOCCAL NUCLEASE DIMER
blastp_pdb 1snd_A 225 323 + 99 Gaps:12 74.83 143 31.78 3e-06 mol:protein length:143 STAPHYLOCOCCAL NUCLEASE DIMER
blastp_pdb 3t13_B 225 323 + 99 Gaps:10 74.83 143 33.64 4e-06 mol:protein length:143 Thermonuclease
blastp_pdb 3t13_A 225 323 + 99 Gaps:10 74.83 143 33.64 4e-06 mol:protein length:143 Thermonuclease
blastp_pdb 3sr1_A 225 323 + 99 Gaps:10 74.83 143 33.64 4e-06 mol:protein length:143 thermonuclease
blastp_pdb 3nxw_A 225 323 + 99 Gaps:10 74.83 143 33.64 5e-06 mol:protein length:143 Thermonuclease
blastp_pdb 3d4d_B 225 323 + 99 Gaps:10 74.83 143 32.71 5e-06 mol:protein length:143 Thermonuclease
blastp_pdb 3d4d_A 225 323 + 99 Gaps:10 74.83 143 32.71 5e-06 mol:protein length:143 Thermonuclease
blastp_pdb 2rbm_A 225 323 + 99 Gaps:10 74.83 143 29.91 7e-06 mol:protein length:143 Thermonuclease
blastp_uniprot_sprot sp|Q39635|Y38K_CAPSE 1 336 + 336 Gaps:2 100.00 338 68.64 2e-172 Uncharacterized 38.1 kDa protein OS Capnoides sempervirens PE 2 SV 1
blastp_uniprot_sprot sp|Q99342|YFI3_ECOLX 198 332 + 135 Gaps:6 86.93 153 38.35 2e-22 Uncharacterized endonuclease OS Escherichia coli PE 3 SV 1
blastp_uniprot_sprot sp|Q7BSX4|YFI3_ECO57 198 332 + 135 Gaps:6 86.93 153 38.35 2e-22 Uncharacterized endonuclease OS Escherichia coli O157:H7 GN L7003 PE 3 SV 1
blastp_uniprot_sprot sp|Q57519|Y1296_HAEIN 224 333 + 110 none 61.80 178 37.27 1e-19 Uncharacterized endonuclease HI_1296 OS Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN HI_1296 PE 3 SV 1
blastp_uniprot_sprot sp|P29769|NUC_SHIFL 208 330 + 123 Gaps:12 77.59 174 31.11 3e-16 Micrococcal nuclease OS Shigella flexneri GN nuc PE 3 SV 1
blastp_uniprot_sprot sp|P22997|PARB4_ECOLX 224 331 + 108 Gaps:11 42.35 281 34.45 2e-14 Protein ParB OS Escherichia coli GN parB PE 4 SV 1
blastp_uniprot_sprot sp|E4ZVE5|LCL3_LEPMJ 225 321 + 97 Gaps:16 37.92 298 33.63 2e-07 Probable endonuclease LCL3 OS Leptosphaeria maculans (strain JN3 / isolate v23.1.3 / race Av1-4-5-6-7-8) GN LCL3 PE 3 SV 1
blastp_uniprot_sprot sp|Q0UVH1|LCL3_PHANO 225 318 + 94 Gaps:18 37.16 296 36.36 3e-07 Probable endonuclease LCL3 OS Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN LCL3 PE 3 SV 2
blastp_uniprot_sprot sp|C4JVW2|LCL3_UNCRE 216 295 + 80 Gaps:11 30.03 303 37.36 7e-06 Probable endonuclease LCL3 OS Uncinocarpus reesii (strain UAMH 1704) GN LCL3 PE 3 SV 1
rpsblast_cdd gnl|CDD|201310 224 319 + 96 Gaps:10 100.00 106 46.23 2e-28 pfam00565 SNase Staphylococcal nuclease homologue. Present in all three domains of cellular life. Four copies in the transcriptional coactivator p100: these however appear to lack the active site residues of Staphylococcal nuclease. Positions 14 (Asp-21) 34 (Arg-35) 39 (Asp-40) 42 (Glu-43) and 110 (Arg-87) (SNase numbering in parentheses) are thought to be involved in substrate-binding and catalysis.

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 264 274 11 PS01284 none Thermonuclease family signature 2. IPR002071
Gene3D 221 326 106 G3DSA:2.40.50.90 none none IPR016071
Gene3D 143 163 21 G3DSA:2.40.50.90 none none IPR016071
SMART 200 319 120 SM00318 none Staphylococcal nuclease homologues IPR016071
SUPERFAMILY 145 160 16 SSF50199 none none IPR016071
SUPERFAMILY 218 326 109 SSF50199 none none IPR016071
Pfam 224 318 95 PF00565 none Staphylococcal nuclease homologue IPR016071
PANTHER 183 334 152 PTHR12302 none none none
SUPERFAMILY 165 212 48 SSF47323 "Reactome:REACT_71" none IPR009080
ProSiteProfiles 142 319 178 PS50830 none Thermonuclease domain profile. IPR016071

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting