Protein : Qrob_P0125660.2 Q. robur
Protein Identifier  ? Qrob_P0125660.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) PTHR23421:SF51 - BETA-GALACTOSIDASE 5 (PTHR23421:SF51) Code Enzyme  EC:3.2.1.23
Gene Prediction Quality  validated Protein length 

Sequence

Length: 857  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
GO:0030246 carbohydrate binding Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100257138 1 850 + 850 Gaps:12 100.00 846 78.01 0.0 beta-galactosidase 3-like
blastp_kegg lcl|mdm:103445112 1 847 + 847 Gaps:15 100.00 848 76.42 0.0 beta-galactosidase 5-like
blastp_kegg lcl|pmum:103335705 3 844 + 842 Gaps:12 99.53 844 77.98 0.0 beta-galactosidase 3-like
blastp_kegg lcl|pper:PRUPE_ppa001363mg 3 844 + 842 Gaps:12 99.53 844 78.10 0.0 hypothetical protein
blastp_kegg lcl|fve:101310350 1 855 + 855 Gaps:13 99.88 853 73.94 0.0 beta-galactosidase 3-like
blastp_kegg lcl|vvi:100232848 1 847 + 847 Gaps:12 94.10 898 73.85 0.0 beta-galactosidase
blastp_kegg lcl|pmum:103340158 1 855 + 855 Gaps:13 99.88 853 73.47 0.0 beta-galactosidase 3
blastp_kegg lcl|fve:101293655 26 844 + 819 Gaps:10 98.55 829 76.01 0.0 beta-galactosidase 3-like
blastp_kegg lcl|tcc:TCM_000280 1 853 + 853 Gaps:12 99.65 854 72.86 0.0 Beta-galactosidase 3 isoform 1
blastp_kegg lcl|cic:CICLE_v10024881mg 10 855 + 846 Gaps:13 98.48 854 73.37 0.0 hypothetical protein
blastp_pdb 3d3a_A 20 335 + 316 Gaps:31 53.10 612 34.46 6e-48 mol:protein length:612 Beta-galactosidase
blastp_pdb 3thd_D 26 409 + 384 Gaps:38 60.55 654 31.06 3e-39 mol:protein length:654 Beta-galactosidase
blastp_pdb 3thd_C 26 409 + 384 Gaps:38 60.55 654 31.06 3e-39 mol:protein length:654 Beta-galactosidase
blastp_pdb 3thd_B 26 409 + 384 Gaps:38 60.55 654 31.06 3e-39 mol:protein length:654 Beta-galactosidase
blastp_pdb 3thd_A 26 409 + 384 Gaps:38 60.55 654 31.06 3e-39 mol:protein length:654 Beta-galactosidase
blastp_pdb 3thc_D 26 409 + 384 Gaps:38 60.55 654 31.06 3e-39 mol:protein length:654 Beta-galactosidase
blastp_pdb 3thc_C 26 409 + 384 Gaps:38 60.55 654 31.06 3e-39 mol:protein length:654 Beta-galactosidase
blastp_pdb 3thc_B 26 409 + 384 Gaps:38 60.55 654 31.06 3e-39 mol:protein length:654 Beta-galactosidase
blastp_pdb 3thc_A 26 409 + 384 Gaps:38 60.55 654 31.06 3e-39 mol:protein length:654 Beta-galactosidase
blastp_pdb 1xc6_A 22 359 + 338 Gaps:47 38.00 971 31.71 3e-33 mol:protein length:971 Beta-Galactosidase
blastp_uniprot_sprot sp|Q9SCV9|BGAL3_ARATH 9 848 + 840 Gaps:12 97.66 856 69.02 0.0 Beta-galactosidase 3 OS Arabidopsis thaliana GN BGAL3 PE 1 SV 1
blastp_uniprot_sprot sp|Q10RB4|BGAL5_ORYSJ 24 843 + 820 Gaps:13 96.91 841 68.22 0.0 Beta-galactosidase 5 OS Oryza sativa subsp. japonica GN Os03g0165400 PE 2 SV 1
blastp_uniprot_sprot sp|P48980|BGAL_SOLLC 26 843 + 818 Gaps:15 97.37 835 63.84 0.0 Beta-galactosidase OS Solanum lycopersicum PE 1 SV 1
blastp_uniprot_sprot sp|Q9SCW1|BGAL1_ARATH 26 843 + 818 Gaps:15 96.22 847 64.42 0.0 Beta-galactosidase 1 OS Arabidopsis thaliana GN BGAL1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9MAJ7|BGAL5_ARATH 10 724 + 715 Gaps:5 98.09 732 68.80 0.0 Beta-galactosidase 5 OS Arabidopsis thaliana GN BGAL5 PE 2 SV 1
blastp_uniprot_sprot sp|P45582|BGAL_ASPOF 26 842 + 817 Gaps:31 96.88 832 64.14 0.0 Beta-galactosidase OS Asparagus officinalis PE 2 SV 1
blastp_uniprot_sprot sp|Q8W0A1|BGAL2_ORYSJ 28 843 + 816 Gaps:25 96.86 827 63.05 0.0 Beta-galactosidase 2 OS Oryza sativa subsp. japonica GN Os01g0580200 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SCV0|BGA12_ARATH 9 724 + 716 Gaps:14 98.63 728 62.95 0.0 Beta-galactosidase 12 OS Arabidopsis thaliana GN BGAL12 PE 2 SV 1
blastp_uniprot_sprot sp|P48981|BGAL_MALDO 11 729 + 719 Gaps:11 98.77 731 61.91 0.0 Beta-galactosidase OS Malus domestica PE 1 SV 1
blastp_uniprot_sprot sp|Q9LFA6|BGAL2_ARATH 9 724 + 716 Gaps:11 98.62 727 62.20 0.0 Beta-galactosidase 2 OS Arabidopsis thaliana GN BGAL2 PE 2 SV 2

28 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 401 568 168 SSF49785 none none IPR008979
PANTHER 682 756 75 PTHR23421:SF51 none none none
Gene3D 615 709 95 G3DSA:2.60.120.260 none none IPR008979
PANTHER 15 657 643 PTHR23421 "KEGG:00052+3.2.1.23","KEGG:00511+3.2.1.23","KEGG:00531+3.2.1.23","KEGG:00600+3.2.1.23","KEGG:00604+3.2.1.23","MetaCyc:PWY-6807";signature_desc=BETA-GALACTOSIDASE RELATED none IPR001944
PANTHER 682 756 75 PTHR23421 "KEGG:00052+3.2.1.23","KEGG:00511+3.2.1.23","KEGG:00531+3.2.1.23","KEGG:00600+3.2.1.23","KEGG:00604+3.2.1.23","MetaCyc:PWY-6807";signature_desc=BETA-GALACTOSIDASE RELATED none IPR001944
PRINTS 641 657 17 PR00742 "KEGG:00052+3.2.1.23","KEGG:00511+3.2.1.23","KEGG:00531+3.2.1.23","KEGG:00600+3.2.1.23","KEGG:00604+3.2.1.23","MetaCyc:PWY-6807" Glycosyl hydrolase family 35 signature IPR001944
PRINTS 170 185 16 PR00742 "KEGG:00052+3.2.1.23","KEGG:00511+3.2.1.23","KEGG:00531+3.2.1.23","KEGG:00600+3.2.1.23","KEGG:00604+3.2.1.23","MetaCyc:PWY-6807" Glycosyl hydrolase family 35 signature IPR001944
PRINTS 37 54 18 PR00742 "KEGG:00052+3.2.1.23","KEGG:00511+3.2.1.23","KEGG:00531+3.2.1.23","KEGG:00600+3.2.1.23","KEGG:00604+3.2.1.23","MetaCyc:PWY-6807" Glycosyl hydrolase family 35 signature IPR001944
PRINTS 113 132 20 PR00742 "KEGG:00052+3.2.1.23","KEGG:00511+3.2.1.23","KEGG:00531+3.2.1.23","KEGG:00600+3.2.1.23","KEGG:00604+3.2.1.23","MetaCyc:PWY-6807" Glycosyl hydrolase family 35 signature IPR001944
PRINTS 286 301 16 PR00742 "KEGG:00052+3.2.1.23","KEGG:00511+3.2.1.23","KEGG:00531+3.2.1.23","KEGG:00600+3.2.1.23","KEGG:00604+3.2.1.23","MetaCyc:PWY-6807" Glycosyl hydrolase family 35 signature IPR001944
PRINTS 614 628 15 PR00742 "KEGG:00052+3.2.1.23","KEGG:00511+3.2.1.23","KEGG:00531+3.2.1.23","KEGG:00600+3.2.1.23","KEGG:00604+3.2.1.23","MetaCyc:PWY-6807" Glycosyl hydrolase family 35 signature IPR001944
PRINTS 249 264 16 PR00742 "KEGG:00052+3.2.1.23","KEGG:00511+3.2.1.23","KEGG:00531+3.2.1.23","KEGG:00600+3.2.1.23","KEGG:00604+3.2.1.23","MetaCyc:PWY-6807" Glycosyl hydrolase family 35 signature IPR001944
PRINTS 306 322 17 PR00742 "KEGG:00052+3.2.1.23","KEGG:00511+3.2.1.23","KEGG:00531+3.2.1.23","KEGG:00600+3.2.1.23","KEGG:00604+3.2.1.23","MetaCyc:PWY-6807" Glycosyl hydrolase family 35 signature IPR001944
PRINTS 58 76 19 PR00742 "KEGG:00052+3.2.1.23","KEGG:00511+3.2.1.23","KEGG:00531+3.2.1.23","KEGG:00600+3.2.1.23","KEGG:00604+3.2.1.23","MetaCyc:PWY-6807" Glycosyl hydrolase family 35 signature IPR001944
Pfam 765 842 78 PF02140 none Galactose binding lectin domain IPR000922
Phobius 21 25 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
ProSiteProfiles 757 843 87 PS50228 none SUEL-type lectin domain profile. IPR000922
Phobius 1 25 25 SIGNAL_PEPTIDE none Signal peptide region none
Pfam 34 338 305 PF01301 "KEGG:00052+3.2.1.23","KEGG:00511+3.2.1.23","KEGG:00531+3.2.1.23","KEGG:00600+3.2.1.23","KEGG:00604+3.2.1.23","MetaCyc:PWY-6807" Glycosyl hydrolases family 35 IPR001944
SUPERFAMILY 24 343 320 SSF51445 none none IPR017853
Phobius 1 9 9 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Gene3D 24 343 320 G3DSA:3.20.20.80 none none IPR013781
Phobius 10 20 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
PANTHER 15 657 643 PTHR23421:SF51 none none none
SUPERFAMILY 687 726 40 SSF49785 none none IPR008979
SUPERFAMILY 578 660 83 SSF49785 none none IPR008979
ProSitePatterns 172 184 13 PS01182 "KEGG:00052+3.2.1.23","KEGG:00511+3.2.1.23","KEGG:00531+3.2.1.23","KEGG:00600+3.2.1.23","KEGG:00604+3.2.1.23","MetaCyc:PWY-6807" Glycosyl hydrolases family 35 putative active site. IPR019801
Phobius 26 856 831 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

1 Localization

Analysis Start End Length
SignalP_EUK 1 25 24

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 25   Secretory pathway 2 0.904 0.017 NON-PLANT 25