Protein : Qrob_P0125270.2 Q. robur
Protein Identifier  ? Qrob_P0125270.2 Organism . Name  Quercus robur
Score  6.1 Score Type  egn
Protein Description  (M=1) PF14633//PF14635//PF14878 - SH2 domain // Helix-hairpin-helix motif // Death-like domain of SPT6 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 817  
Kegg Orthology  K11292
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0006357 regulation of transcription from RNA polymerase II promoter Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.
GO:0032784 regulation of DNA-templated transcription, elongation Any process that modulates the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides catalyzed by a DNA-dependent RNA polymerase.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_044643 1 782 + 782 Gaps:30 49.60 1617 82.54 0.0 Global transcription factor group B1 isoform 1
blastp_kegg lcl|cmo:103485847 1 750 + 750 Gaps:7 46.38 1615 86.25 0.0 transcription elongation factor SPT6
blastp_kegg lcl|csv:101219281 1 750 + 750 Gaps:12 46.23 1631 85.15 0.0 transcription elongation factor SPT6-like
blastp_kegg lcl|pmum:103342255 1 816 + 816 Gaps:43 49.91 1633 79.75 0.0 transcription elongation factor SPT6
blastp_kegg lcl|rcu:RCOM_1700760 1 794 + 794 Gaps:7 48.30 1650 81.68 0.0 suppressor of ty putative
blastp_kegg lcl|pper:PRUPE_ppa000164mg 1 816 + 816 Gaps:79 52.35 1553 79.83 0.0 hypothetical protein
blastp_kegg lcl|cam:101499554 1 805 + 805 Gaps:19 49.42 1639 80.86 0.0 SUPT6H suppressor of Ty 6 homolog (S. cerevisiae)
blastp_kegg lcl|pop:POPTR_0016s02900g 1 809 + 809 Gaps:14 47.46 1692 80.07 0.0 POPTRDRAFT_255131 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10013566mg 1 816 + 816 Gaps:23 50.06 1592 80.68 0.0 hypothetical protein
blastp_kegg lcl|cit:102621404 1 816 + 816 Gaps:24 49.04 1623 80.90 0.0 transcription elongation factor SPT6-like
blastp_pdb 3psi_A 16 572 + 557 Gaps:30 45.86 1219 28.09 9e-55 mol:protein length:1219 Transcription elongation factor SPT6
blastp_pdb 3psf_A 16 327 + 312 Gaps:25 30.97 1030 31.35 1e-34 mol:protein length:1030 Transcription elongation factor SPT6
blastp_pdb 2l3t_A 417 572 + 156 Gaps:5 75.88 199 33.11 7e-18 mol:protein length:199 Transcription elongation factor SPT6
blastp_pdb 3psj_A 417 572 + 156 Gaps:5 71.90 210 33.11 1e-17 mol:protein length:210 Transcription elongation factor SPT6
blastp_pdb 3psk_D 417 572 + 156 Gaps:5 71.56 211 33.11 1e-17 mol:protein length:211 Transcription elongation factor SPT6
blastp_pdb 3psk_C 417 572 + 156 Gaps:5 71.56 211 33.11 1e-17 mol:protein length:211 Transcription elongation factor SPT6
blastp_pdb 3psk_B 417 572 + 156 Gaps:5 71.56 211 33.11 1e-17 mol:protein length:211 Transcription elongation factor SPT6
blastp_pdb 3psk_A 417 572 + 156 Gaps:5 71.56 211 33.11 1e-17 mol:protein length:211 Transcription elongation factor SPT6
blastp_pdb 3pjp_B 417 567 + 151 Gaps:5 73.37 199 32.19 2e-16 mol:protein length:199 Transcription elongation factor SPT6
blastp_pdb 3pjp_A 417 567 + 151 Gaps:5 73.37 199 32.19 2e-16 mol:protein length:199 Transcription elongation factor SPT6
blastp_uniprot_sprot sp|Q7KZ85|SPT6H_HUMAN 8 636 + 629 Gaps:70 38.88 1726 30.40 2e-87 Transcription elongation factor SPT6 OS Homo sapiens GN SUPT6H PE 1 SV 2
blastp_uniprot_sprot sp|Q62383|SPT6H_MOUSE 1 609 + 609 Gaps:73 38.24 1726 30.30 2e-86 Transcription elongation factor SPT6 OS Mus musculus GN Supt6h PE 1 SV 2
blastp_uniprot_sprot sp|Q8UVK2|SPT6H_DANRE 15 632 + 618 Gaps:67 38.30 1726 30.26 2e-83 Transcription elongation factor SPT6 OS Danio rerio GN supt6h PE 1 SV 1
blastp_uniprot_sprot sp|Q9W420|SPT6H_DROME 2 637 + 636 Gaps:93 37.96 1831 28.63 4e-82 Transcription elongation factor SPT6 OS Drosophila melanogaster GN Spt6 PE 1 SV 1
blastp_uniprot_sprot sp|Q8NIV6|SPT6_NEUCR 4 603 + 600 Gaps:36 42.51 1402 29.87 2e-70 Transcription elongation factor spt-6 OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN spt-6 PE 3 SV 1
blastp_uniprot_sprot sp|Q2U561|SPT6_ASPOR 14 603 + 590 Gaps:37 41.28 1422 29.13 9e-64 Transcription elongation factor spt6 OS Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN spt6 PE 3 SV 1
blastp_uniprot_sprot sp|Q4WWH6|SPT6_ASPFU 14 603 + 590 Gaps:51 41.34 1420 30.15 2e-63 Transcription elongation factor spt6 OS Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN spt6 PE 3 SV 1
blastp_uniprot_sprot sp|Q4HYQ4|SPT6_GIBZE 4 603 + 600 Gaps:45 42.40 1408 30.15 6e-63 Transcription elongation factor SPT6 OS Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN SPT6 PE 3 SV 1
blastp_uniprot_sprot sp|P34703|SPT6H_CAEEL 16 609 + 594 Gaps:82 42.08 1521 26.88 8e-63 Suppressor of Ty 6 homolog OS Caenorhabditis elegans GN emb-5 PE 1 SV 1
blastp_uniprot_sprot sp|Q5B7Q7|SPT6_EMENI 14 613 + 600 Gaps:58 42.20 1417 30.27 1e-62 Transcription elongation factor spt6 OS Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN spt6 PE 3 SV 2

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 11 786 776 PTHR10145:SF6 none none IPR017072
SUPERFAMILY 82 173 92 SSF47781 "Reactome:REACT_216" none IPR010994
Pfam 71 172 102 PF14635 none Helix-hairpin-helix motif none
PANTHER 11 786 776 PTHR10145 none none none
SUPERFAMILY 14 67 54 SSF53098 none none IPR012337
ProSiteProfiles 300 370 71 PS50126 none S1 domain profile. IPR003029
Pfam 386 605 220 PF14633 none SH2 domain IPR000980
SUPERFAMILY 295 374 80 SSF50249 none none IPR012340
Gene3D 121 274 154 G3DSA:1.10.150.310 none none IPR023097
Coils 393 414 22 Coil none none none
SMART 298 370 73 SM00316 none Ribosomal protein S1-like RNA-binding domain IPR022967
SUPERFAMILY 556 607 52 SSF55550 none none IPR000980
Pfam 185 296 112 PF14878 none Death-like domain of SPT6 IPR027999
SUPERFAMILY 186 275 90 SSF47781 "Reactome:REACT_216" none IPR010994
Gene3D 292 372 81 G3DSA:2.40.50.140 none none IPR012340

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting