Protein : Qrob_P0125260.2 Q. robur
Protein Identifier  ? Qrob_P0125260.2 Organism . Name  Quercus robur
Score  94.0 Score Type  egn
Protein Description  (M=1) KOG1832//KOG1856 - HIV-1 Vpr-binding protein [Cell cycle control cell division chromosome partitioning]. // Transcription elongation factor SPT6 [RNA processing and modification]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 807  
Kegg Orthology  K11292
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0006357 regulation of transcription from RNA polymerase II promoter Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.
GO:0032784 regulation of DNA-templated transcription, elongation Any process that modulates the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides catalyzed by a DNA-dependent RNA polymerase.

26 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100241331 81 794 + 714 Gaps:15 42.59 1660 83.73 0.0 transcription elongation factor SPT6-like
blastp_kegg lcl|pmum:103342255 80 794 + 715 Gaps:12 43.42 1633 84.77 0.0 transcription elongation factor SPT6
blastp_kegg lcl|pper:PRUPE_ppa000164mg 80 794 + 715 Gaps:12 45.65 1553 84.20 0.0 hypothetical protein
blastp_kegg lcl|cmo:103485847 78 794 + 717 Gaps:12 43.90 1615 80.96 0.0 transcription elongation factor SPT6
blastp_kegg lcl|pxb:103966217 80 794 + 715 Gaps:13 42.98 1652 80.70 0.0 transcription elongation factor SPT6
blastp_kegg lcl|csv:101219281 60 794 + 735 Gaps:14 44.45 1631 79.45 0.0 transcription elongation factor SPT6-like
blastp_kegg lcl|mdm:103426069 80 794 + 715 Gaps:13 42.59 1667 80.42 0.0 transcription elongation factor SPT6
blastp_kegg lcl|tcc:TCM_044643 81 794 + 714 Gaps:14 43.66 1617 81.44 0.0 Global transcription factor group B1 isoform 1
blastp_kegg lcl|cit:102621404 1 794 + 794 Gaps:37 50.71 1623 76.67 0.0 transcription elongation factor SPT6-like
blastp_kegg lcl|pvu:PHAVU_001G117200g 50 794 + 745 Gaps:39 45.86 1679 75.84 0.0 hypothetical protein
blastp_pdb 3psf_A 227 721 + 495 Gaps:69 45.05 1030 22.20 4e-08 mol:protein length:1030 Transcription elongation factor SPT6
blastp_uniprot_sprot sp|Q09915|SPT6_SCHPO 28 792 + 765 Gaps:133 54.80 1365 28.88 5e-42 Transcription elongation factor spt6 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN spt6 PE 1 SV 2
blastp_uniprot_sprot sp|Q9W420|SPT6H_DROME 120 794 + 675 Gaps:158 40.03 1831 26.47 1e-39 Transcription elongation factor SPT6 OS Drosophila melanogaster GN Spt6 PE 1 SV 1
blastp_uniprot_sprot sp|Q93148|SPT6H_CAEBR 227 795 + 569 Gaps:96 38.07 1521 26.42 1e-38 Suppressor of Ty 6 homolog OS Caenorhabditis briggsae GN emb-5 PE 2 SV 2
blastp_uniprot_sprot sp|Q2U561|SPT6_ASPOR 85 788 + 704 Gaps:107 47.47 1422 28.74 1e-35 Transcription elongation factor spt6 OS Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN spt6 PE 3 SV 1
blastp_uniprot_sprot sp|Q4WWH6|SPT6_ASPFU 135 720 + 586 Gaps:98 41.27 1420 30.38 2e-34 Transcription elongation factor spt6 OS Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN spt6 PE 3 SV 1
blastp_uniprot_sprot sp|Q4PI89|SPT6_USTMA 190 794 + 605 Gaps:113 38.89 1723 23.58 4e-34 Transcription elongation factor SPT6 OS Ustilago maydis (strain 521 / FGSC 9021) GN SPT6 PE 3 SV 1
blastp_uniprot_sprot sp|Q5B7Q7|SPT6_EMENI 83 788 + 706 Gaps:83 47.49 1417 27.64 4e-33 Transcription elongation factor spt6 OS Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN spt6 PE 3 SV 2
blastp_uniprot_sprot sp|Q8NIV6|SPT6_NEUCR 179 792 + 614 Gaps:75 42.01 1402 25.30 8e-31 Transcription elongation factor spt-6 OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN spt-6 PE 3 SV 1
blastp_uniprot_sprot sp|P0CR73|SPT6_CRYNB 190 790 + 601 Gaps:69 39.84 1506 26.00 6e-29 Transcription elongation factor SPT6 OS Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN SPT6 PE 3 SV 1
blastp_uniprot_sprot sp|Q4HYQ4|SPT6_GIBZE 195 792 + 598 Gaps:69 40.55 1408 25.92 5e-26 Transcription elongation factor SPT6 OS Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN SPT6 PE 3 SV 1
rpsblast_cdd gnl|CDD|32366 305 700 + 396 Gaps:86 40.51 780 25.32 8e-14 COG2183 Tex Transcriptional accessory protein [Transcription].
rpsblast_cdd gnl|CDD|128971 710 794 + 85 Gaps:12 73.74 99 24.66 3e-09 smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues the catalytic residues are substituted indicating that they lack enzymatic functions.
rpsblast_cdd gnl|CDD|34868 7 174 + 168 Gaps:37 3.07 4600 28.37 4e-07 COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only].
rpsblast_kog gnl|CDD|37067 102 794 + 693 Gaps:75 52.96 1299 32.70 1e-118 KOG1856 KOG1856 KOG1856 Transcription elongation factor SPT6 [RNA processing and modification].
rpsblast_kog gnl|CDD|37043 30 174 + 145 Gaps:35 7.26 1516 31.82 2e-07 KOG1832 KOG1832 KOG1832 HIV-1 Vpr-binding protein [Cell cycle control cell division chromosome partitioning].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 343 343 PTHR10145:SF6 none none IPR017072
PANTHER 362 794 433 PTHR10145:SF6 none none IPR017072
Coils 54 75 22 Coil none none none
SUPERFAMILY 710 780 71 SSF53098 none none IPR012337
PANTHER 1 343 343 PTHR10145 none none none
PANTHER 362 794 433 PTHR10145 none none none
Gene3D 462 694 233 G3DSA:1.10.3500.10 none none IPR023323
SUPERFAMILY 305 689 385 SSF158832 none none none

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting