Protein : Qrob_P0124700.2 Q. robur
Protein Identifier  ? Qrob_P0124700.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=7) PTHR11177//PTHR11177:SF141 - CHITINASE // SUBFAMILY NOT NAMED Code Enzyme  EC:3.2.1.14
Gene Prediction Quality  validated Protein length 

Sequence

Length: 306  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0012s10410g 6 302 + 297 none 98.67 301 82.49 2e-180 POPTRDRAFT_892025 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1264000 1 302 + 302 none 99.02 305 80.46 2e-177 Chitinase 1 precursor putative (EC:3.2.1.14)
blastp_kegg lcl|tcc:TCM_041948 1 302 + 302 none 94.08 321 74.83 3e-168 Chitinase 1
blastp_kegg lcl|vvi:100253579 1 302 + 302 Gaps:1 99.01 304 77.41 3e-168 chitinase 2-like
blastp_kegg lcl|pper:PRUPE_ppa009096mg 5 302 + 298 Gaps:1 97.06 306 77.78 7e-167 hypothetical protein
blastp_kegg lcl|pmum:103323775 5 302 + 298 Gaps:1 96.12 309 77.44 6e-166 chitinase 2-like
blastp_kegg lcl|pop:POPTR_0015s11260g 27 302 + 276 none 98.92 279 82.25 9e-166 POPTRDRAFT_252815 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10028881mg 3 303 + 301 Gaps:2 97.43 311 74.92 2e-164 hypothetical protein
blastp_kegg lcl|cit:102614102 3 303 + 301 Gaps:2 97.43 311 74.92 2e-164 chitinase 1-like
blastp_kegg lcl|pmum:103326119 5 302 + 298 Gaps:2 96.10 308 76.69 6e-162 chitinase 2-like
blastp_pdb 3sim_B 32 301 + 270 Gaps:6 98.91 275 58.09 5e-103 mol:protein length:275 Protein Family 18 Chitinase
blastp_pdb 3sim_A 32 301 + 270 Gaps:6 98.91 275 58.09 5e-103 mol:protein length:275 Protein Family 18 Chitinase
blastp_pdb 1nar_A 32 304 + 273 Gaps:32 98.97 290 36.93 1e-35 mol:protein length:290 NARBONIN
blastp_uniprot_sprot sp|Q9SLP4|CHIT1_TULBA 32 302 + 271 Gaps:2 86.94 314 71.79 5e-137 Chitinase 1 OS Tulipa bakeri PE 1 SV 1
blastp_uniprot_sprot sp|Q7M443|CHIT2_TULBA 32 302 + 271 Gaps:2 99.27 275 69.60 8e-137 Chitinase 2 OS Tulipa bakeri PE 1 SV 1
blastp_uniprot_sprot sp|P39657|RUAP_SOYBN 56 214 + 159 Gaps:7 56.54 283 38.12 2e-21 RuBisCO-associated protein OS Glycine max PE 2 SV 1
rpsblast_cdd gnl|CDD|119361 32 286 + 255 Gaps:4 100.00 253 60.47 1e-104 cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba..
rpsblast_cdd gnl|CDD|201406 58 219 + 162 Gaps:19 48.92 325 26.42 1e-14 pfam00704 Glyco_hydro_18 Glycosyl hydrolases family 18.
rpsblast_cdd gnl|CDD|119349 51 217 + 167 Gaps:21 75.24 210 23.42 1e-12 cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase family 18) type II chitinases hydrolyze chitin an abundant polymer of beta-1 4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses bacteria fungi protozoan parasites insects and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase chitobiase hevamine zymocin-alpha narbonin SI-CLP (stabilin-1 interacting chitinase-like protein) IDGF (imaginal disc growth factor) CFLE (cortical fragment-lytic enzyme) spore hydrolase the type III and type V plant chitinases the endo-beta-N-acetylglucosaminidases and the chitolectins. The GH85 (glycosyl hydrolase family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are included in this alignment model..
rpsblast_cdd gnl|CDD|197811 76 260 + 185 Gaps:30 57.19 334 23.04 1e-09 smart00636 Glyco_18 Glyco_18 domain.
rpsblast_cdd gnl|CDD|119365 66 220 + 155 Gaps:42 47.52 322 27.45 1e-07 cd06548 GH18_chitinase The GH18 (glycosyl hydrolases family 18) type II chitinases hydrolyze chitin an abundant polymer of N-acetylglucosamine and have been identified in bacteria fungi insects plants viruses and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel..
rpsblast_cdd gnl|CDD|119350 105 217 + 113 Gaps:20 38.14 312 28.57 3e-07 cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD a chitinase found in Bacillus circulans hydrolyzes the 1 4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain a chitin-binding domain and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus..

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 24 286 263 G3DSA:3.20.20.80 none none IPR013781
Phobius 1 5 5 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 26 305 280 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 27 295 269 SSF51445 none none IPR017853
Phobius 18 25 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
PANTHER 1 220 220 PTHR11177 none none none
PANTHER 1 220 220 PTHR11177:SF141 none none none
ProSitePatterns 147 155 9 PS01095 "KEGG:00520+3.2.1.14","MetaCyc:PWY-6902" Chitinases family 18 active site. IPR001579
Phobius 6 17 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 1 25 25 SIGNAL_PEPTIDE none Signal peptide region none
Pfam 51 219 169 PF00704 none Glycosyl hydrolases family 18 IPR001223
PRINTS 77 92 16 PR00551 "KEGG:00520+3.2.1.14","MetaCyc:PWY-6902" 2-S globulin family signature IPR000677
PRINTS 30 43 14 PR00551 "KEGG:00520+3.2.1.14","MetaCyc:PWY-6902" 2-S globulin family signature IPR000677
PRINTS 94 112 19 PR00551 "KEGG:00520+3.2.1.14","MetaCyc:PWY-6902" 2-S globulin family signature IPR000677
PRINTS 264 283 20 PR00551 "KEGG:00520+3.2.1.14","MetaCyc:PWY-6902" 2-S globulin family signature IPR000677

2 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 25 24
SignalP_EUK 1 25 24

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 25   Secretory pathway 1 0.907 0.031 NON-PLANT 25