Protein : Qrob_P0124270.2 Q. robur
Protein Identifier  ? Qrob_P0124270.2 Organism . Name  Quercus robur
Score  91.5 Score Type  egn
Protein Description  (M=1) PTHR13301:SF35 - CELLULOSE SYNTHASE-LIKE PROTEIN D1-RELATED (PTHR13301:SF35) Code Enzyme  EC:2.4.2.24
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1290  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0030244 cellulose biosynthetic process The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation.
GO:0016760 cellulose synthase (UDP-forming) activity Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1).

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10023400mg 1 1289 + 1289 Gaps:23 100.00 1142 91.86 0.0 hypothetical protein
blastp_kegg lcl|cit:102615911 1 1289 + 1289 Gaps:23 100.00 1142 91.86 0.0 cellulose synthase-like protein D3-like
blastp_kegg lcl|tcc:TCM_025462 1 1289 + 1289 Gaps:66 100.00 1175 89.96 0.0 Cellulose synthase-like D3
blastp_kegg lcl|rcu:RCOM_1325350 1 1289 + 1289 Gaps:22 100.00 1143 92.83 0.0 Cellulose synthase A catalytic subunit 3 [UDP-forming] putative (EC:2.4.1.12)
blastp_kegg lcl|mdm:103417903 1 1289 + 1289 Gaps:21 100.00 1146 90.31 0.0 cellulose synthase-like protein D3
blastp_kegg lcl|gmx:100792604 1 1289 + 1289 Gaps:22 100.00 1143 91.08 0.0 cellulose synthase-like protein D2-like
blastp_kegg lcl|gmx:100786644 1 1289 + 1289 Gaps:22 100.00 1143 90.64 0.0 cellulose synthase-like protein D2-like
blastp_kegg lcl|vvi:100261385 1 1289 + 1289 Gaps:24 100.00 1149 90.69 0.0 cellulose synthase-like protein D3-like
blastp_kegg lcl|pxb:103943290 1 1289 + 1289 Gaps:21 100.00 1146 90.14 0.0 cellulose synthase-like protein D3
blastp_kegg lcl|csv:101221949 1 1289 + 1289 Gaps:27 100.00 1148 88.68 0.0 cellulose synthase-like protein D3-like
blastp_uniprot_sprot sp|Q9M9M4|CSLD3_ARATH 1 1289 + 1289 Gaps:30 100.00 1145 85.41 0.0 Cellulose synthase-like protein D3 OS Arabidopsis thaliana GN CSLD3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LFL0|CSLD2_ARATH 2 1289 + 1288 Gaps:35 99.83 1145 84.69 0.0 Cellulose synthase-like protein D2 OS Arabidopsis thaliana GN CSLD2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LHZ7|CSLD2_ORYSJ 7 1289 + 1283 Gaps:51 99.15 1170 81.21 0.0 Cellulose synthase-like protein D2 OS Oryza sativa subsp. japonica GN CSLD2 PE 2 SV 1
blastp_uniprot_sprot sp|A2YU42|CSLD2_ORYSI 7 1289 + 1283 Gaps:51 99.15 1170 81.21 0.0 Cellulose synthase-like protein D2 OS Oryza sativa subsp. indica GN CSLD2 PE 3 SV 1
blastp_uniprot_sprot sp|Q8W3F9|CSLD1_ORYSJ 16 1289 + 1274 Gaps:62 99.91 1127 78.42 0.0 Cellulose synthase-like protein D1 OS Oryza sativa subsp. japonica GN CSLD1 PE 2 SV 1
blastp_uniprot_sprot sp|A2ZAK8|CSLD1_ORYSI 16 1289 + 1274 Gaps:62 99.91 1127 78.42 0.0 Cellulose synthase-like protein D1 OS Oryza sativa subsp. indica GN CSLD1 PE 3 SV 2
blastp_uniprot_sprot sp|Q9SZL9|CSLD4_ARATH 32 1289 + 1258 Gaps:61 98.20 1111 75.44 0.0 Cellulose synthase-like protein D4 OS Arabidopsis thaliana GN CSLD4 PE 2 SV 1
blastp_uniprot_sprot sp|Q7EZW6|CSLD3_ORYSJ 28 1289 + 1262 Gaps:60 97.47 1147 70.57 0.0 Cellulose synthase-like protein D3 OS Oryza sativa subsp. japonica GN CSLD3 PE 2 SV 2
blastp_uniprot_sprot sp|O49323|CSLD1_ARATH 8 1284 + 1277 Gaps:45 97.49 1036 69.80 0.0 Cellulose synthase-like protein D1 OS Arabidopsis thaliana GN CSLD1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SRW9|CSLD5_ARATH 32 1289 + 1258 Gaps:74 95.34 1181 67.41 0.0 Cellulose synthase-like protein D5 OS Arabidopsis thaliana GN CSLD5 PE 2 SV 1
rpsblast_cdd gnl|CDD|177890 1 1289 + 1289 Gaps:34 100.00 1135 83.61 0.0 PLN02248 PLN02248 cellulose synthase-like protein.
rpsblast_cdd gnl|CDD|146277 500 1289 + 790 Gaps:112 100.00 716 62.15 0.0 pfam03552 Cellulose_synt Cellulose synthase. Cellulose an aggregate of unbranched polymers of beta-1 4-linked glucose residues is the major component of wood and thus paper and is synthesised by plants most algae some bacteria and fungi and even some animals. The genes that synthesise cellulose in higher plants differ greatly from the well-characterized genes found in Acetobacter and Agrobacterium sp. More correctly designated as 'cellulose synthase catalytic subunits' plant cellulose synthase (CesA) proteins are integral membrane proteins approximately 1 000 amino acids in length. There are a number of highly conserved residues including several motifs shown to be necessary for processive glycosyltransferase activity.
rpsblast_cdd gnl|CDD|178244 261 1275 + 1015 Gaps:132 76.18 1079 55.72 0.0 PLN02638 PLN02638 cellulose synthase A (UDP-forming) catalytic subunit.
rpsblast_cdd gnl|CDD|178055 242 1275 + 1034 Gaps:160 78.70 1094 51.57 0.0 PLN02436 PLN02436 cellulose synthase A.
rpsblast_cdd gnl|CDD|178503 119 1275 + 1157 Gaps:176 97.70 1044 47.94 0.0 PLN02915 PLN02915 cellulose synthase A [UDP-forming] catalytic subunit.
rpsblast_cdd gnl|CDD|178022 251 1286 + 1036 Gaps:140 77.33 1085 54.11 0.0 PLN02400 PLN02400 cellulose synthase.
rpsblast_cdd gnl|CDD|177841 258 1275 + 1018 Gaps:122 77.40 1040 57.14 0.0 PLN02189 PLN02189 cellulose synthase.
rpsblast_cdd gnl|CDD|177846 121 1275 + 1155 Gaps:174 98.06 977 49.06 0.0 PLN02195 PLN02195 cellulose synthase A.
rpsblast_cdd gnl|CDD|177842 417 1215 + 799 Gaps:110 83.86 756 38.01 2e-61 PLN02190 PLN02190 cellulose synthase-like protein.
rpsblast_cdd gnl|CDD|178481 402 1209 + 808 Gaps:41 78.88 734 39.72 4e-38 PLN02893 PLN02893 Cellulose synthase-like protein.

35 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 131 180 50 PF14570 none RING/Ubox like zinc-binding domain none
Phobius 1118 1136 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1220 1241 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 442 461 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 113 187 75 G3DSA:3.30.40.10 none none IPR013083
Phobius 1062 1085 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 500 1280 781 PF03552 none Cellulose synthase IPR005150
Phobius 338 377 40 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 285 306 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 378 401 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 654 684 31 PTHR13301 none none none
PANTHER 100 259 160 PTHR13301 none none none
PANTHER 704 1286 583 PTHR13301 none none none
Phobius 1253 1273 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 284 284 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 462 1061 600 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 431 441 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 654 684 31 PTHR13301:SF35 none none none
PANTHER 370 629 260 PTHR13301:SF35 none none none
PANTHER 704 1286 583 PTHR13301:SF35 none none none
Phobius 1195 1214 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1161 1194 34 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 307 317 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 402 406 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1215 1219 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1242 1252 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1137 1160 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1097 1117 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1274 1289 16 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 318 337 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

11 Localization

Analysis Start End Length
TMHMM 407 429 22
TMHMM 373 392 19
TMHMM 288 310 22
TMHMM 1066 1088 22
TMHMM 320 337 17
TMHMM 1135 1157 22
TMHMM 1254 1273 19
TMHMM 1224 1241 17
TMHMM 1187 1209 22
TMHMM 442 461 19
TMHMM 1101 1120 19

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 13   Mitochondrion 4 0.014 0.740 NON-PLANT 13