Protein : Qrob_P0123940.2 Q. robur
Protein Identifier  ? Qrob_P0123940.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=14) 4.2.1.78 - (S)-norcoclaurine synthase. Code Enzyme  EC:4.2.1.78
Gene Prediction Quality  validated Protein length 

Sequence

Length: 139  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006952 defense response Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
GO:0009607 response to biotic stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism.

17 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10012995mg 1 132 + 132 Gaps:22 99.35 155 51.95 2e-45 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10022655mg 1 133 + 133 Gaps:22 100.00 155 49.68 3e-45 hypothetical protein
blastp_kegg lcl|cit:102624226 1 133 + 133 Gaps:22 100.00 155 49.68 3e-45 S-norcoclaurine synthase-like
blastp_kegg lcl|cit:102609489 1 132 + 132 Gaps:22 99.35 155 51.30 1e-44 S-norcoclaurine synthase-like
blastp_kegg lcl|gmx:100305838 1 138 + 138 Gaps:23 100.00 161 50.31 2e-44 uncharacterized LOC100305838
blastp_kegg lcl|cam:101513514 1 138 + 138 Gaps:25 100.00 161 48.45 4e-43 S-norcoclaurine synthase-like
blastp_kegg lcl|pvu:PHAVU_011G019300g 1 134 + 134 Gaps:23 97.52 161 47.13 4e-41 hypothetical protein
blastp_kegg lcl|vvi:100242527 1 132 + 132 Gaps:27 95.73 164 46.50 7e-39 S-norcoclaurine synthase-like
blastp_kegg lcl|fve:101293141 3 132 + 130 Gaps:26 91.76 170 46.15 2e-37 S-norcoclaurine synthase-like
blastp_kegg lcl|cmo:103503965 1 132 + 132 Gaps:21 98.08 156 39.87 2e-32 S-norcoclaurine synthase-like
blastp_pdb 2vq5_B 5 138 + 134 Gaps:26 77.61 201 31.41 3e-17 mol:protein length:201 S-NORCOCLAURINE SYNTHASE
blastp_pdb 2vq5_A 5 138 + 134 Gaps:26 77.61 201 31.41 3e-17 mol:protein length:201 S-NORCOCLAURINE SYNTHASE
blastp_pdb 2vne_B 5 138 + 134 Gaps:26 77.61 201 31.41 3e-17 mol:protein length:201 S-NORCOCLAURINE SYNTHASE
blastp_pdb 2vne_A 5 138 + 134 Gaps:26 77.61 201 31.41 3e-17 mol:protein length:201 S-NORCOCLAURINE SYNTHASE
blastp_uniprot_sprot sp|Q67A25|NCS_THLFG 5 138 + 134 Gaps:26 74.29 210 31.41 1e-16 S-norcoclaurine synthase OS Thalictrum flavum subsp. glaucum PE 1 SV 1
blastp_uniprot_sprot sp|A2A1A1|NCS2_COPJA 4 104 + 101 Gaps:24 62.76 196 32.52 2e-10 S-norcoclaurine synthase 2 OS Coptis japonica GN PR10A PE 2 SV 2
rpsblast_cdd gnl|CDD|176858 3 105 + 103 Gaps:26 83.11 148 26.02 2e-15 cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa) Bet v 1 and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch Betula verrucosa) and related proteins. In addition to birch Bet v 1 this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins norcoclaurine synthases (NCSs) cytokinin binding proteins (CSBPs) major latex proteins (MLPs) and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids cytokinins flavonoids and fatty acids. Hyp-1 a PR-10 from Hypericum perforatum/St. John's wort catalyzes the condensation of two molecules of emodin to the bioactive naphthodianthrone hypericin. NCSs catalyze the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. The role of MLPs is unclear however they are associated with fruit and flower development and in pathogen defense responses. A number of PR-10 proteins in this subgroup including Bet v 1 have in vitro RNase activity the biological significance of which is unclear. Bet v 1 family proteins have a conserved glycine-rich P (phosphate-binding)-loop proximal to the entrance of the ligand-binding pocket. However its conformation differs from that of the canonical P-loop structure found in nucleotide-binding proteins. Several PR-10 members including Bet v1 are allergenic. Cross-reactivity of Bet v 1 with homologs from plant foods results in birch-fruit syndrome.

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 49 132 84 G3DSA:3.30.530.20 none none IPR023393
SUPERFAMILY 4 131 128 SSF55961 none none none
Pfam 53 130 78 PF00407 none Pathogenesis-related protein Bet v I family IPR000916

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting