Protein : Qrob_P0120940.2 Q. robur
Protein Identifier  ? Qrob_P0120940.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) PTHR13301//PTHR13301:SF34 - X-BOX TRANSCRIPTION FACTOR-RELATED // SUBFAMILY NOT NAMED Code Enzyme  EC:2.4.1.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 534  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0030244 cellulose biosynthetic process The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation.
GO:0016760 cellulose synthase (UDP-forming) activity Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1).

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_016501 1 531 + 531 Gaps:4 72.10 742 64.30 0.0 Cellulose synthase like G3 putative
blastp_kegg lcl|tcc:TCM_016503 1 531 + 531 Gaps:6 72.18 744 64.62 0.0 Cellulose synthase like G3 putative
blastp_kegg lcl|tcc:TCM_016506 1 531 + 531 Gaps:6 72.18 744 64.25 0.0 Cellulose synthase like G3 putative
blastp_kegg lcl|tcc:TCM_016502 1 533 + 533 Gaps:31 76.42 967 64.68 0.0 Cellulose synthase-like protein G3
blastp_kegg lcl|pmum:103337794 1 531 + 531 Gaps:6 72.18 744 63.13 0.0 cellulose synthase-like protein G3
blastp_kegg lcl|fve:101314092 1 527 + 527 Gaps:6 72.54 732 63.84 0.0 cellulose synthase-like protein G3-like
blastp_kegg lcl|rcu:RCOM_1312160 1 528 + 528 Gaps:6 71.49 747 64.04 0.0 transferase putative (EC:2.4.1.12)
blastp_kegg lcl|pop:POPTR_0003s14230g 1 531 + 531 Gaps:4 71.91 744 62.62 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0003s14220g 1 528 + 528 Gaps:4 71.99 739 63.16 0.0 POPTRDRAFT_554513 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa001978mg 1 532 + 532 Gaps:6 73.02 734 62.13 0.0 hypothetical protein
blastp_uniprot_sprot sp|Q0WVN5|CSLG3_ARATH 1 525 + 525 Gaps:8 70.44 751 58.60 0.0 Cellulose synthase-like protein G3 OS Arabidopsis thaliana GN CSLG3 PE 2 SV 2
blastp_uniprot_sprot sp|Q8VYR4|CSLG2_ARATH 1 523 + 523 Gaps:13 72.02 722 55.58 0.0 Cellulose synthase-like protein G2 OS Arabidopsis thaliana GN CSLG2 PE 2 SV 1
blastp_uniprot_sprot sp|Q570S7|CSLG1_ARATH 1 526 + 526 Gaps:8 69.74 760 54.72 0.0 Cellulose synthase-like protein G1 OS Arabidopsis thaliana GN CSLG1 PE 2 SV 1
blastp_uniprot_sprot sp|Q0DXZ1|CSLE2_ORYSJ 1 527 + 527 Gaps:16 71.01 745 37.81 2e-123 Cellulose synthase-like protein E2 OS Oryza sativa subsp. japonica GN CSLE2 PE 2 SV 1
blastp_uniprot_sprot sp|Q651X7|CSLE1_ORYSJ 1 516 + 516 Gaps:20 70.56 737 35.96 2e-115 Cellulose synthase-like protein E1 OS Oryza sativa subsp. japonica GN CSLE1 PE 2 SV 2
blastp_uniprot_sprot sp|Q651X6|CSLE6_ORYSJ 1 526 + 526 Gaps:20 72.25 728 35.93 1e-114 Cellulose synthase-like protein E6 OS Oryza sativa subsp. japonica GN CSLE6 PE 2 SV 1
blastp_uniprot_sprot sp|Q8VZK9|CSLE1_ARATH 1 522 + 522 Gaps:19 70.64 729 39.22 3e-114 Cellulose synthase-like protein E1 OS Arabidopsis thaliana GN CSLE1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SWW6|CESA7_ARATH 2 520 + 519 Gaps:99 56.14 1026 32.99 8e-84 Cellulose synthase A catalytic subunit 7 [UDP-forming] OS Arabidopsis thaliana GN CESA7 PE 1 SV 1
blastp_uniprot_sprot sp|Q339N5|CSLH1_ORYSJ 23 526 + 504 Gaps:48 72.00 750 33.89 4e-76 Cellulose synthase-like protein H1 OS Oryza sativa subsp. japonica GN CSLH1 PE 2 SV 2
blastp_uniprot_sprot sp|Q7XUU0|CSLH3_ORYSJ 23 529 + 507 Gaps:64 68.31 792 32.53 2e-70 Putative cellulose synthase-like protein H3 OS Oryza sativa subsp. japonica GN CSLH3 PE 3 SV 3
rpsblast_cdd gnl|CDD|178481 1 531 + 531 Gaps:4 72.89 734 69.91 0.0 PLN02893 PLN02893 Cellulose synthase-like protein.
rpsblast_cdd gnl|CDD|177842 43 477 + 435 Gaps:74 62.57 756 33.19 1e-60 PLN02190 PLN02190 cellulose synthase-like protein.
rpsblast_cdd gnl|CDD|177841 2 520 + 519 Gaps:38 49.52 1040 37.28 7e-49 PLN02189 PLN02189 cellulose synthase.
rpsblast_cdd gnl|CDD|178055 2 526 + 525 Gaps:29 47.53 1094 37.12 7e-47 PLN02436 PLN02436 cellulose synthase A.
rpsblast_cdd gnl|CDD|146277 2 526 + 525 Gaps:34 70.53 716 39.01 3e-46 pfam03552 Cellulose_synt Cellulose synthase. Cellulose an aggregate of unbranched polymers of beta-1 4-linked glucose residues is the major component of wood and thus paper and is synthesised by plants most algae some bacteria and fungi and even some animals. The genes that synthesise cellulose in higher plants differ greatly from the well-characterized genes found in Acetobacter and Agrobacterium sp. More correctly designated as 'cellulose synthase catalytic subunits' plant cellulose synthase (CesA) proteins are integral membrane proteins approximately 1 000 amino acids in length. There are a number of highly conserved residues including several motifs shown to be necessary for processive glycosyltransferase activity.
rpsblast_cdd gnl|CDD|178244 2 520 + 519 Gaps:26 47.73 1079 38.25 4e-46 PLN02638 PLN02638 cellulose synthase A (UDP-forming) catalytic subunit.
rpsblast_cdd gnl|CDD|178503 2 520 + 519 Gaps:25 49.81 1044 35.77 1e-44 PLN02915 PLN02915 cellulose synthase A [UDP-forming] catalytic subunit.
rpsblast_cdd gnl|CDD|177846 2 520 + 519 Gaps:29 53.02 977 38.22 8e-44 PLN02195 PLN02195 cellulose synthase A.
rpsblast_cdd gnl|CDD|178022 2 520 + 519 Gaps:24 47.47 1085 36.12 1e-42 PLN02400 PLN02400 cellulose synthase.
rpsblast_cdd gnl|CDD|177890 35 460 + 426 Gaps:53 37.09 1135 37.05 2e-28 PLN02248 PLN02248 cellulose synthase-like protein.

19 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 467 477 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 508 527 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 338 356 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 528 533 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 357 377 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 42 426 385 PTHR13301:SF34 none none none
Phobius 420 446 27 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 378 396 19 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 397 419 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 42 426 385 PTHR13301 none none none
Phobius 447 466 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 69 190 122 SSF53448 none none IPR029044
SUPERFAMILY 239 352 114 SSF53448 none none IPR029044
Phobius 497 507 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 318 337 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 208 525 318 PF03552 none Cellulose synthase IPR005150
Pfam 2 190 189 PF03552 none Cellulose synthase IPR005150
Phobius 478 496 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 317 317 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

6 Localization

Analysis Start End Length
TMHMM 447 466 19
TMHMM 397 419 22
TMHMM 478 500 22
TMHMM 355 377 22
TMHMM 510 532 22
TMHMM 318 340 22

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

0 Targeting