Protein : Qrob_P0120220.2 Q. robur
Protein Identifier  ? Qrob_P0120220.2 Organism . Name  Quercus robur
Score  75.1 Score Type  egn
Protein Description  (M=1) K00962 - polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] Code Enzyme  EC:2.7.7.8
Gene Prediction Quality  validated Protein length 

Sequence

Length: 362  
Kegg Orthology  K00962
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0004654 polyribonucleotide nucleotidyltransferase activity Catalysis of the reaction: ATP + RNA(n) = diphosphate + RNA(n+1).
GO:0006402 mRNA catabolic process The chemical reactions and pathways resulting in the breakdown of mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10019242mg 2 336 + 335 Gaps:18 54.73 645 83.57 0.0 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa003945mg 2 336 + 335 Gaps:18 65.49 539 80.74 0.0 hypothetical protein
blastp_kegg lcl|cit:102615727 2 336 + 335 Gaps:18 38.54 916 83.57 0.0 polyribonucleotide nucleotidyltransferase 1 chloroplastic-like
blastp_kegg lcl|rcu:RCOM_1321070 2 336 + 335 Gaps:18 37.24 948 81.59 0.0 polyribonucleotide nucleotidyltransferase putative (EC:2.7.7.8)
blastp_kegg lcl|sly:101245783 2 336 + 335 Gaps:18 38.75 911 80.45 0.0 polyribonucleotide nucleotidyltransferase 1 chloroplastic-like
blastp_kegg lcl|vvi:100265692 2 336 + 335 Gaps:18 37.32 946 82.15 0.0 polyribonucleotide nucleotidyltransferase-like
blastp_kegg lcl|tcc:TCM_025836 2 336 + 335 Gaps:18 37.32 946 81.02 0.0 Polyribonucleotide nucleotidyltransferase isoform 1
blastp_kegg lcl|sot:102599047 2 336 + 335 Gaps:18 39.05 904 80.17 0.0 probable polyribonucleotide nucleotidyltransferase 1 chloroplastic-like
blastp_kegg lcl|pmum:103342318 2 336 + 335 Gaps:18 37.63 938 80.45 0.0 probable polyribonucleotide nucleotidyltransferase 1 chloroplastic
blastp_kegg lcl|atr:s00004p00095690 2 336 + 335 Gaps:18 37.59 939 79.04 0.0 AMTR_s00004p00095690 hypothetical protein
blastp_pdb 4am3_C 2 316 + 315 Gaps:9 42.68 717 49.35 1e-88 mol:protein length:717 POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
blastp_pdb 4am3_B 2 316 + 315 Gaps:9 42.68 717 49.35 1e-88 mol:protein length:717 POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
blastp_pdb 4am3_A 2 316 + 315 Gaps:9 42.68 717 49.35 1e-88 mol:protein length:717 POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
blastp_pdb 4aid_C 2 316 + 315 Gaps:9 42.15 726 49.35 2e-88 mol:protein length:726 POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
blastp_pdb 4aid_B 2 316 + 315 Gaps:9 42.15 726 49.35 2e-88 mol:protein length:726 POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
blastp_pdb 4aid_A 2 316 + 315 Gaps:9 42.15 726 49.35 2e-88 mol:protein length:726 POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
blastp_pdb 4aim_A 2 316 + 315 Gaps:9 42.15 726 49.02 2e-88 mol:protein length:726 POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
blastp_pdb 3cdi_A 2 323 + 322 Gaps:9 43.29 723 48.88 5e-87 mol:protein length:723 Polynucleotide phosphorylase
blastp_pdb 1e3p_A 2 323 + 322 Gaps:8 42.01 757 43.71 8e-70 mol:protein length:757 GUANOSINE PENTAPHOSPHATE SYNTHETASE
blastp_pdb 1e3h_A 2 323 + 322 Gaps:8 42.01 757 43.71 8e-70 mol:protein length:757 GUANOSINE PENTAPHOSPHATE SYNTHETASE
blastp_uniprot_sprot sp|Q8GZQ3|PNP1_ARATH 2 336 + 335 Gaps:18 38.29 922 77.05 0.0 Polyribonucleotide nucleotidyltransferase 1 chloroplastic OS Arabidopsis thaliana GN PNP1 PE 1 SV 1
blastp_uniprot_sprot sp|Q69LE7|PNP1_ORYSJ 2 336 + 335 Gaps:18 39.14 902 77.62 0.0 Probable polyribonucleotide nucleotidyltransferase 1 chloroplastic OS Oryza sativa subsp. japonica GN PNP1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6MDI2|PNP_PARUW 2 337 + 336 Gaps:9 46.92 697 59.94 1e-118 Polyribonucleotide nucleotidyltransferase OS Protochlamydia amoebophila (strain UWE25) GN pnp PE 3 SV 2
blastp_uniprot_sprot sp|Q5L5B4|PNP_CHLAB 2 336 + 335 Gaps:27 49.57 694 56.10 2e-111 Polyribonucleotide nucleotidyltransferase OS Chlamydophila abortus (strain DSM 27085 / S26/3) GN pnp PE 3 SV 1
blastp_uniprot_sprot sp|Q9PL77|PNP_CHLMU 2 336 + 335 Gaps:27 49.64 693 54.07 3e-111 Polyribonucleotide nucleotidyltransferase OS Chlamydia muridarum (strain MoPn / Nigg) GN pnp PE 3 SV 1
blastp_uniprot_sprot sp|Q822C1|PNP_CHLCV 2 336 + 335 Gaps:27 49.57 694 56.10 1e-110 Polyribonucleotide nucleotidyltransferase OS Chlamydophila caviae (strain GPIC) GN pnp PE 3 SV 1
blastp_uniprot_sprot sp|O84849|PNP_CHLTR 2 336 + 335 Gaps:27 49.50 695 54.36 2e-110 Polyribonucleotide nucleotidyltransferase OS Chlamydia trachomatis (strain D/UW-3/Cx) GN pnp PE 3 SV 1
blastp_uniprot_sprot sp|Q3KKJ7|PNP_CHLTA 2 336 + 335 Gaps:27 49.50 695 54.36 2e-110 Polyribonucleotide nucleotidyltransferase OS Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B) GN pnp PE 3 SV 1
blastp_uniprot_sprot sp|Q255L4|PNP_CHLFF 2 336 + 335 Gaps:27 49.57 694 56.40 2e-110 Polyribonucleotide nucleotidyltransferase OS Chlamydophila felis (strain Fe/C-56) GN pnp PE 3 SV 1
blastp_uniprot_sprot sp|B0BAV0|PNP_CHLTB 2 336 + 335 Gaps:27 49.50 695 54.36 2e-110 Polyribonucleotide nucleotidyltransferase OS Chlamydia trachomatis serovar L2b (strain UCH-1/proctitis) GN pnp PE 3 SV 1

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 15 336 322 PTHR11252 "KEGG:00230+2.7.7.8","KEGG:00240+2.7.7.8";signature_desc=POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE none IPR012162
Phobius 3 14 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Pfam 230 286 57 PF00013 none KH domain IPR004088
PANTHER 15 336 322 PTHR11252:SF1 none none none
Pfam 17 123 107 PF01138 "Reactome:REACT_21257" 3' exoribonuclease family, domain 1 IPR001247
SUPERFAMILY 229 314 86 SSF54791 none none IPR004088
Phobius 1 18 18 SIGNAL_PEPTIDE none Signal peptide region none
ProSiteProfiles 226 286 61 PS50084 none Type-1 KH domain profile. IPR004088
SUPERFAMILY 117 218 102 SSF55666 "Reactome:REACT_21257" none IPR015847
Phobius 15 18 4 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
SUPERFAMILY 16 125 110 SSF54211 none none IPR020568
SMART 225 290 66 SM00322 none K homology RNA-binding domain IPR004087
Phobius 19 361 343 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 2 2 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Gene3D 15 213 199 G3DSA:3.30.230.70 none none IPR027408
Pfam 128 202 75 PF03725 "Reactome:REACT_21257" 3' exoribonuclease family, domain 2 IPR015847
Gene3D 224 301 78 G3DSA:3.30.1370.10 none none IPR004088

2 Localization

Analysis Start End Length
SignalP_GRAM_NEGATIVE 1 18 17
SignalP_EUK 1 23 22

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8
Bourran2_2014_nPriLBD*_A4 Qrob_Chr07 7 s_1C6BY7_802 s_1BPEBU_1211 7,15 0 16,34 lod 3,9419 10,2

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 23   Secretory pathway 1 0.965 0.026 NON-PLANT 23