Protein : Qrob_P0120200.2 Q. robur
Protein Identifier  ? Qrob_P0120200.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) 2.7.7.8 - Polyribonucleotide nucleotidyltransferase. Code Enzyme  EC:2.7.7.8
Gene Prediction Quality  validated Protein length 

Sequence

Length: 179  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0004654 polyribonucleotide nucleotidyltransferase activity Catalysis of the reaction: ATP + RNA(n) = diphosphate + RNA(n+1).
GO:0006402 mRNA catabolic process The chemical reactions and pathways resulting in the breakdown of mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa021007mg 1 174 + 174 Gaps:24 41.92 396 66.27 5e-54 hypothetical protein
blastp_kegg lcl|pmum:103342318 1 174 + 174 Gaps:24 17.70 938 66.27 4e-52 probable polyribonucleotide nucleotidyltransferase 1 chloroplastic
blastp_kegg lcl|pxb:103934997 1 174 + 174 Gaps:22 18.34 916 63.69 1e-51 probable polyribonucleotide nucleotidyltransferase 1 chloroplastic
blastp_kegg lcl|pxb:103956270 1 174 + 174 Gaps:22 18.34 916 63.69 1e-51 probable polyribonucleotide nucleotidyltransferase 1 chloroplastic
blastp_kegg lcl|pxb:103944365 1 174 + 174 Gaps:23 18.25 926 63.31 2e-51 probable polyribonucleotide nucleotidyltransferase 1 chloroplastic
blastp_kegg lcl|mdm:103449351 1 174 + 174 Gaps:24 18.34 916 66.07 2e-51 probable polyribonucleotide nucleotidyltransferase 1 chloroplastic
blastp_kegg lcl|csv:101205015 1 174 + 174 Gaps:26 18.66 922 63.37 1e-50 probable polyribonucleotide nucleotidyltransferase 1 chloroplastic-like
blastp_kegg lcl|csv:101225610 1 174 + 174 Gaps:26 18.66 922 63.37 1e-50 probable polyribonucleotide nucleotidyltransferase 1 chloroplastic-like
blastp_kegg lcl|pvu:PHAVU_001G105200g 30 174 + 145 Gaps:13 39.17 337 70.45 3e-50 hypothetical protein
blastp_kegg lcl|cit:102615727 1 174 + 174 Gaps:21 19.10 916 64.00 7e-50 polyribonucleotide nucleotidyltransferase 1 chloroplastic-like
blastp_pdb 4aid_C 93 174 + 82 none 11.29 726 51.22 1e-18 mol:protein length:726 POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
blastp_pdb 4aid_B 93 174 + 82 none 11.29 726 51.22 1e-18 mol:protein length:726 POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
blastp_pdb 4aid_A 93 174 + 82 none 11.29 726 51.22 1e-18 mol:protein length:726 POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
blastp_pdb 4aim_A 93 174 + 82 none 11.29 726 51.22 1e-18 mol:protein length:726 POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
blastp_pdb 4am3_C 93 174 + 82 none 11.44 717 51.22 1e-18 mol:protein length:717 POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
blastp_pdb 4am3_B 93 174 + 82 none 11.44 717 51.22 1e-18 mol:protein length:717 POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
blastp_pdb 4am3_A 93 174 + 82 none 11.44 717 51.22 1e-18 mol:protein length:717 POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
blastp_pdb 3cdi_A 87 174 + 88 none 12.17 723 44.32 9e-16 mol:protein length:723 Polynucleotide phosphorylase
blastp_pdb 3h1c_X 87 174 + 88 none 16.03 549 44.32 1e-15 mol:protein length:549 Polyribonucleotide nucleotidyltransferase
blastp_pdb 3h1c_V 87 174 + 88 none 16.03 549 44.32 1e-15 mol:protein length:549 Polyribonucleotide nucleotidyltransferase
blastp_uniprot_sprot sp|Q8GZQ3|PNP1_ARATH 77 174 + 98 Gaps:3 10.95 922 78.22 1e-44 Polyribonucleotide nucleotidyltransferase 1 chloroplastic OS Arabidopsis thaliana GN PNP1 PE 1 SV 1
blastp_uniprot_sprot sp|Q69LE7|PNP1_ORYSJ 70 174 + 105 none 11.64 902 70.48 2e-43 Probable polyribonucleotide nucleotidyltransferase 1 chloroplastic OS Oryza sativa subsp. japonica GN PNP1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6MDI2|PNP_PARUW 90 174 + 85 none 12.20 697 55.29 6e-24 Polyribonucleotide nucleotidyltransferase OS Protochlamydia amoebophila (strain UWE25) GN pnp PE 3 SV 2
blastp_uniprot_sprot sp|Q2NBZ2|PNP_ERYLH 90 174 + 85 none 11.05 769 54.12 7e-21 Polyribonucleotide nucleotidyltransferase OS Erythrobacter litoralis (strain HTCC2594) GN pnp PE 3 SV 1
blastp_uniprot_sprot sp|Q3J9C0|PNP_NITOC 88 174 + 87 none 12.52 695 55.17 1e-20 Polyribonucleotide nucleotidyltransferase OS Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN pnp PE 3 SV 1
blastp_uniprot_sprot sp|O84849|PNP_CHLTR 97 174 + 78 Gaps:1 11.08 695 58.44 1e-20 Polyribonucleotide nucleotidyltransferase OS Chlamydia trachomatis (strain D/UW-3/Cx) GN pnp PE 3 SV 1
blastp_uniprot_sprot sp|Q89WB3|PNP_BRADU 89 174 + 86 none 11.94 720 52.33 2e-20 Polyribonucleotide nucleotidyltransferase OS Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) GN pnp PE 3 SV 1
blastp_uniprot_sprot sp|Q1QS60|PNP_NITHX 89 174 + 86 none 11.94 720 52.33 2e-20 Polyribonucleotide nucleotidyltransferase OS Nitrobacter hamburgensis (strain X14 / DSM 10229) GN pnp PE 3 SV 2
blastp_uniprot_sprot sp|Q2J2J4|PNP_RHOP2 89 174 + 86 none 11.98 718 52.33 2e-20 Polyribonucleotide nucleotidyltransferase OS Rhodopseudomonas palustris (strain HaA2) GN pnp PE 3 SV 1
blastp_uniprot_sprot sp|Q3KKJ7|PNP_CHLTA 97 174 + 78 Gaps:1 11.08 695 57.14 2e-20 Polyribonucleotide nucleotidyltransferase OS Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B) GN pnp PE 3 SV 1

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 92 174 83 G3DSA:3.30.230.70 none none IPR027408
PANTHER 75 174 100 PTHR11252 "KEGG:00230+2.7.7.8","KEGG:00240+2.7.7.8";signature_desc=POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE none IPR012162
SUPERFAMILY 91 174 84 SSF54211 none none IPR020568
PANTHER 75 174 100 PTHR11252:SF1 none none none
Pfam 98 172 75 PF01138 "Reactome:REACT_21257" 3' exoribonuclease family, domain 1 IPR001247

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8
Bourran2_2014_nPriLBD*_A4 Qrob_Chr07 7 s_1C6BY7_802 s_1BPEBU_1211 7,15 0 16,34 lod 3,9419 10,2

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 49   Mitochondrion 5 0.033 0.583 NON-PLANT 49