Protein : Qrob_P0119960.2 Q. robur
Protein Identifier  ? Qrob_P0119960.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) KOG0265//KOG0266//KOG0271//KOG0272//KOG0282//KOG0293//KOG0306//KOG0316//KOG0318//KOG0321 - U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]. // WD40 repeat-containing protein [General function prediction only]. // Notchless-like WD40 repeat-containing protein [Function unknown]. // U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]. // mRNA splicing factor [Function unknown]. // WD40 repeat-containing protein [Function unknown]. // WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]. // Conserved WD40 repeat-containing protein [Function unknown]. // WD40 repeat stress protein/actin interacting protein [Cytoskeleton]. // WD40 repeat-containing protein L2DTL [Function unknown]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 284  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa003324mg 2 283 + 282 Gaps:3 48.72 585 84.56 5e-175 hypothetical protein
blastp_kegg lcl|pmum:103321123 2 283 + 282 Gaps:3 50.71 562 83.51 5e-173 uncharacterized WD repeat-containing protein C343.04c
blastp_kegg lcl|cit:102613121 2 282 + 281 Gaps:1 48.19 581 81.07 1e-162 WD repeat-containing protein 26-like
blastp_kegg lcl|tcc:TCM_007644 4 283 + 280 Gaps:1 48.02 581 79.93 3e-160 Transducin family protein / WD-40 repeat family protein isoform 1
blastp_kegg lcl|rcu:RCOM_1454530 2 283 + 282 Gaps:1 48.62 578 77.94 1e-158 WD-repeat protein putative
blastp_kegg lcl|pmum:103328944 2 283 + 282 Gaps:1 48.62 578 75.44 4e-152 WD repeat-containing protein 26-like
blastp_kegg lcl|vvi:100266218 2 283 + 282 none 48.12 586 73.76 5e-152 WD repeat-containing protein 26-like
blastp_kegg lcl|tcc:TCM_001929 8 283 + 276 Gaps:1 44.43 619 74.18 4e-148 Transducin family protein / WD-40 repeat family protein isoform 1
blastp_kegg lcl|mdm:103405143 2 283 + 282 Gaps:1 48.62 578 72.95 3e-147 WD repeat-containing protein 26-like
blastp_kegg lcl|pxb:103965651 2 283 + 282 Gaps:1 48.62 578 72.95 4e-147 WD repeat-containing protein 26-like
blastp_pdb 2co0_A 5 261 + 257 Gaps:11 81.90 315 27.13 1e-23 mol:protein length:315 WD-REPEAT PROTEIN 5
blastp_pdb 2o9k_C 5 261 + 257 Gaps:11 82.43 313 27.13 1e-23 mol:protein length:313 WD repeat protein 5
blastp_pdb 2o9k_A 5 261 + 257 Gaps:11 82.43 313 27.13 1e-23 mol:protein length:313 WD repeat protein 5
blastp_pdb 2h9n_C 5 261 + 257 Gaps:11 82.43 313 27.13 1e-23 mol:protein length:313 WD-repeat protein 5
blastp_pdb 2h9n_A 5 261 + 257 Gaps:11 82.43 313 27.13 1e-23 mol:protein length:313 WD-repeat protein 5
blastp_pdb 2h9m_C 5 261 + 257 Gaps:11 82.43 313 27.13 1e-23 mol:protein length:313 WD-repeat protein 5
blastp_pdb 2h9m_A 5 261 + 257 Gaps:11 82.43 313 27.13 1e-23 mol:protein length:313 WD-repeat protein 5
blastp_pdb 4ery_A 5 261 + 257 Gaps:11 82.69 312 27.13 1e-23 mol:protein length:312 WD repeat-containing protein 5
blastp_pdb 4erq_C 5 261 + 257 Gaps:11 82.69 312 27.13 1e-23 mol:protein length:312 WD repeat-containing protein 5
blastp_pdb 4erq_B 5 261 + 257 Gaps:11 82.69 312 27.13 1e-23 mol:protein length:312 WD repeat-containing protein 5
blastp_uniprot_sprot sp|Q9UT85|YIPC_SCHPO 8 266 + 259 Gaps:16 51.87 507 40.68 8e-51 Uncharacterized WD repeat-containing protein C343.04c OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPAC343.04c PE 4 SV 1
blastp_uniprot_sprot sp|Q9H7D7|WDR26_HUMAN 16 259 + 244 Gaps:8 36.91 661 38.52 3e-45 WD repeat-containing protein 26 OS Homo sapiens GN WDR26 PE 1 SV 3
blastp_uniprot_sprot sp|Q5SP67|WDR26_DANRE 7 259 + 253 Gaps:8 43.92 576 37.55 5e-45 WD repeat-containing protein 26 OS Danio rerio GN wdr26 PE 1 SV 1
blastp_uniprot_sprot sp|Q28D01|WDR26_XENTR 7 259 + 253 Gaps:8 41.21 614 36.76 5e-45 WD repeat-containing protein 26 OS Xenopus tropicalis GN wdr26 PE 2 SV 2
blastp_uniprot_sprot sp|Q8C6G8|WDR26_MOUSE 16 259 + 244 Gaps:8 38.07 641 38.11 7e-45 WD repeat-containing protein 26 OS Mus musculus GN Wdr26 PE 2 SV 3
blastp_uniprot_sprot sp|Q7K0L4|WDR26_DROME 7 274 + 268 Gaps:13 43.02 630 37.64 2e-42 WD repeat-containing protein 26 homolog OS Drosophila melanogaster GN CG7611 PE 1 SV 1
blastp_uniprot_sprot sp|P49695|PKWA_THECU 5 260 + 256 Gaps:21 33.02 742 43.27 1e-23 Probable serine/threonine-protein kinase PkwA OS Thermomonospora curvata GN pkwA PE 3 SV 1
blastp_uniprot_sprot sp|Q5RHI5|DTL_DANRE 16 262 + 247 Gaps:48 45.29 647 27.30 4e-23 Denticleless protein homolog OS Danio rerio GN dtl PE 2 SV 1
blastp_uniprot_sprot sp|Q93847|YZLL_CAEEL 13 258 + 246 Gaps:53 69.62 395 40.00 5e-23 Uncharacterized WD repeat-containing protein K04G11.4 OS Caenorhabditis elegans GN K04G11.4 PE 4 SV 1
blastp_uniprot_sprot sp|Q498M4|WDR5_RAT 5 261 + 257 Gaps:11 77.25 334 27.13 6e-23 WD repeat-containing protein 5 OS Rattus norvegicus GN Wdr5 PE 2 SV 1

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 75 89 15 PS00678 none Trp-Asp (WD) repeats signature. IPR019775
ProSiteProfiles 14 268 255 PS50294 none Trp-Asp (WD) repeats circular profile. IPR017986
SUPERFAMILY 9 258 250 SSF50978 none none IPR017986
Pfam 10 46 37 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 50 88 39 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 220 258 39 PF00400 none WD domain, G-beta repeat IPR001680
ProSiteProfiles 14 55 42 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
PANTHER 1 273 273 PTHR22838 none none none
PANTHER 1 273 273 PTHR22838:SF0 none none none
SMART 132 170 39 SM00320 none WD40 repeats IPR001680
SMART 49 88 40 SM00320 none WD40 repeats IPR001680
SMART 219 259 41 SM00320 none WD40 repeats IPR001680
SMART 7 46 40 SM00320 none WD40 repeats IPR001680
SMART 90 130 41 SM00320 none WD40 repeats IPR001680
SMART 174 216 43 SM00320 none WD40 repeats IPR001680
ProSiteProfiles 226 261 36 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
Gene3D 4 263 260 G3DSA:2.130.10.10 none none IPR015943

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8
Bourran2_2014_nPriLBD*_A4 Qrob_Chr07 7 s_1C6BY7_802 s_1BPEBU_1211 7,15 0 16,34 lod 3,9419 10,2

0 Targeting