Protein : Qrob_P0119830.2 Q. robur
Protein Identifier  ? Qrob_P0119830.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) K12816 - pre-mRNA-processing factor 17 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 594  
Kegg Orthology  K12816
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10031042mg 1 593 + 593 Gaps:7 99.83 587 82.42 0.0 hypothetical protein
blastp_kegg lcl|cit:102611505 1 593 + 593 Gaps:7 99.83 587 82.25 0.0 pre-mRNA-processing factor 17-like
blastp_kegg lcl|mdm:103431858 1 593 + 593 Gaps:4 99.83 590 80.98 0.0 pre-mRNA-processing factor 17-like
blastp_kegg lcl|pxb:103953522 1 593 + 593 Gaps:4 99.83 590 80.81 0.0 pre-mRNA-processing factor 17
blastp_kegg lcl|pmum:103321755 1 593 + 593 Gaps:4 99.83 590 80.81 0.0 pre-mRNA-processing factor 17
blastp_kegg lcl|pper:PRUPE_ppa003242mg 1 593 + 593 Gaps:4 99.83 590 80.81 0.0 hypothetical protein
blastp_kegg lcl|mdm:103451963 1 593 + 593 Gaps:4 99.83 592 80.71 0.0 pre-mRNA-processing factor 17
blastp_kegg lcl|pop:POPTR_0010s07510g 1 593 + 593 Gaps:20 99.83 574 84.47 0.0 POPTRDRAFT_880825 hypothetical protein
blastp_kegg lcl|cmo:103489012 1 593 + 593 Gaps:13 99.83 581 84.83 0.0 pre-mRNA-processing factor 17
blastp_kegg lcl|csv:101214854 1 593 + 593 Gaps:13 100.00 580 84.83 0.0 pre-mRNA-processing factor 17-like
blastp_pdb 2xl3_B 295 578 + 284 Gaps:12 83.23 334 29.14 1e-31 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2xl3_A 295 578 + 284 Gaps:12 83.23 334 29.14 1e-31 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2xl2_B 295 578 + 284 Gaps:12 83.23 334 29.14 1e-31 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2xl2_A 295 578 + 284 Gaps:12 83.23 334 29.14 1e-31 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2gnq_A 295 578 + 284 Gaps:12 82.74 336 29.14 2e-31 mol:protein length:336 WD-repeat protein 5
blastp_pdb 2co0_C 295 578 + 284 Gaps:12 88.25 315 29.14 2e-31 mol:protein length:315 WD-REPEAT PROTEIN 5
blastp_pdb 2cnx_A 295 578 + 284 Gaps:12 88.25 315 29.14 2e-31 mol:protein length:315 WD-REPEAT PROTEIN 5
blastp_pdb 2co0_A 295 578 + 284 Gaps:12 88.25 315 29.14 3e-31 mol:protein length:315 WD-REPEAT PROTEIN 5
blastp_pdb 2o9k_C 295 578 + 284 Gaps:12 88.82 313 29.14 4e-31 mol:protein length:313 WD repeat protein 5
blastp_pdb 2o9k_A 295 578 + 284 Gaps:12 88.82 313 29.14 4e-31 mol:protein length:313 WD repeat protein 5
blastp_uniprot_sprot sp|O60508|PRP17_HUMAN 69 593 + 525 Gaps:40 87.56 579 50.49 6e-173 Pre-mRNA-processing factor 17 OS Homo sapiens GN CDC40 PE 1 SV 1
blastp_uniprot_sprot sp|Q9DC48|PRP17_MOUSE 69 593 + 525 Gaps:40 87.56 579 50.49 8e-173 Pre-mRNA-processing factor 17 OS Mus musculus GN Cdc40 PE 2 SV 1
blastp_uniprot_sprot sp|O43071|PRP17_SCHPO 76 593 + 518 Gaps:67 90.50 558 38.81 8e-112 Pre-mRNA-processing factor 17 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN prp17 PE 1 SV 1
blastp_uniprot_sprot sp|P40968|PRP17_YEAST 183 590 + 408 Gaps:27 93.85 455 34.43 5e-82 Pre-mRNA-processing factor 17 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN CDC40 PE 1 SV 2
blastp_uniprot_sprot sp|E9Q349|WDR25_MOUSE 291 593 + 303 Gaps:13 57.94 535 30.97 1e-45 WD repeat-containing protein 25 OS Mus musculus GN Wdr25 PE 2 SV 1
blastp_uniprot_sprot sp|Q64LD2|WDR25_HUMAN 291 593 + 303 Gaps:13 56.99 544 29.68 4e-44 WD repeat-containing protein 25 OS Homo sapiens GN WDR25 PE 2 SV 3
blastp_uniprot_sprot sp|Q54KL5|WDR5_DICDI 295 578 + 284 Gaps:15 83.28 335 30.82 7e-33 WD repeat-containing protein 5 homolog OS Dictyostelium discoideum GN wdr5 PE 3 SV 1
blastp_uniprot_sprot sp|Q498M4|WDR5_RAT 295 578 + 284 Gaps:12 83.23 334 29.14 5e-31 WD repeat-containing protein 5 OS Rattus norvegicus GN Wdr5 PE 2 SV 1
blastp_uniprot_sprot sp|P61965|WDR5_MOUSE 295 578 + 284 Gaps:12 83.23 334 29.14 5e-31 WD repeat-containing protein 5 OS Mus musculus GN Wdr5 PE 1 SV 1
blastp_uniprot_sprot sp|P61964|WDR5_HUMAN 295 578 + 284 Gaps:12 83.23 334 29.14 5e-31 WD repeat-containing protein 5 OS Homo sapiens GN WDR5 PE 1 SV 1

23 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 343 384 42 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
ProSiteProfiles 299 333 35 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
ProSiteProfiles 299 593 295 PS50294 none Trp-Asp (WD) repeats circular profile. IPR017986
ProSiteProfiles 429 461 33 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
ProSitePatterns 319 333 15 PS00678 none Trp-Asp (WD) repeats signature. IPR019775
Gene3D 277 593 317 G3DSA:2.130.10.10 none none IPR015943
Gene3D 159 187 29 G3DSA:2.130.10.10 none none IPR015943
PANTHER 212 593 382 PTHR19852 none none none
PANTHER 4 187 184 PTHR19852 none none none
Pfam 295 332 38 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 337 375 39 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 557 593 37 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 424 461 38 PF00400 none WD domain, G-beta repeat IPR001680
SUPERFAMILY 290 593 304 SSF50978 none none IPR017986
PRINTS 319 333 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
PRINTS 362 376 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
PRINTS 448 462 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
SMART 292 332 41 SM00320 none WD40 repeats IPR001680
SMART 336 375 40 SM00320 none WD40 repeats IPR001680
SMART 554 593 40 SM00320 none WD40 repeats IPR001680
SMART 510 551 42 SM00320 none WD40 repeats IPR001680
SMART 422 461 40 SM00320 none WD40 repeats IPR001680
SMART 378 419 42 SM00320 none WD40 repeats IPR001680

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8
Bourran2_2014_nPriLBD*_A4 Qrob_Chr07 7 s_1C6BY7_802 s_1BPEBU_1211 7,15 0 16,34 lod 3,9419 10,2

0 Targeting