Protein : Qrob_P0117960.2 Q. robur
Protein Identifier  ? Qrob_P0117960.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=11) PTHR22849//PTHR22849:SF7 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMED Code Enzyme  EC:6.3.2.19
Gene Prediction Quality  validated Protein length 

Sequence

Length: 436  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0004842 ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
GO:0016567 protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.

27 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100794340 1 435 + 435 Gaps:6 100.00 437 68.42 0.0 U-box domain-containing protein 21-like
blastp_kegg lcl|pvu:PHAVU_004G147500g 1 435 + 435 Gaps:4 100.00 437 67.73 0.0 hypothetical protein
blastp_kegg lcl|gmx:100817623 1 435 + 435 Gaps:5 100.00 438 67.35 0.0 U-box domain-containing protein 21-like
blastp_kegg lcl|pop:POPTR_0012s03960g 1 435 + 435 Gaps:8 100.00 439 66.06 0.0 POPTRDRAFT_772246 hypothetical protein
blastp_kegg lcl|pop:POPTR_0015s05380g 1 435 + 435 Gaps:8 100.00 439 66.29 0.0 hypothetical protein
blastp_kegg lcl|pmum:103338916 1 435 + 435 Gaps:17 100.00 450 65.78 0.0 U-box domain-containing protein 21-like
blastp_kegg lcl|tcc:TCM_013015 2 435 + 434 Gaps:10 100.00 436 68.81 0.0 ARM repeat superfamily protein
blastp_kegg lcl|pxb:103950544 1 435 + 435 Gaps:9 100.00 444 64.64 0.0 U-box domain-containing protein 21-like
blastp_kegg lcl|pper:PRUPE_ppa005659mg 1 435 + 435 Gaps:16 100.00 449 65.48 0.0 hypothetical protein
blastp_kegg lcl|mdm:103431254 1 435 + 435 Gaps:9 100.00 444 63.74 0.0 U-box domain-containing protein 21-like
blastp_pdb 1t1h_A 26 92 + 67 none 85.90 78 53.73 2e-19 mol:protein length:78 armadillo repeat containing protein
blastp_pdb 2c2v_V 25 94 + 70 Gaps:2 89.74 78 38.57 3e-06 mol:protein length:78 CARBOXY TERMINUS OF HSP70-INTERACTING PROTEIN
blastp_pdb 2c2v_U 25 94 + 70 Gaps:2 89.74 78 38.57 3e-06 mol:protein length:78 CARBOXY TERMINUS OF HSP70-INTERACTING PROTEIN
blastp_pdb 2c2v_T 25 94 + 70 Gaps:2 89.74 78 38.57 3e-06 mol:protein length:78 CARBOXY TERMINUS OF HSP70-INTERACTING PROTEIN
blastp_pdb 2c2v_S 25 94 + 70 Gaps:2 89.74 78 38.57 3e-06 mol:protein length:78 CARBOXY TERMINUS OF HSP70-INTERACTING PROTEIN
blastp_uniprot_sprot sp|Q5PNY6|PUB21_ARATH 2 435 + 434 Gaps:21 96.32 435 46.78 7e-119 U-box domain-containing protein 21 OS Arabidopsis thaliana GN PUB21 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C8D1|PUB20_ARATH 20 435 + 416 Gaps:30 93.74 431 45.54 4e-111 U-box domain-containing protein 20 OS Arabidopsis thaliana GN PUB20 PE 2 SV 1
blastp_uniprot_sprot sp|Q84TG3|PUB23_ARATH 20 412 + 393 Gaps:41 93.43 411 36.20 2e-57 E3 ubiquitin-protein ligase PUB23 OS Arabidopsis thaliana GN PUB23 PE 1 SV 1
blastp_uniprot_sprot sp|Q9FXA4|PUB26_ARATH 15 429 + 415 Gaps:25 97.86 421 35.44 4e-55 U-box domain-containing protein 26 OS Arabidopsis thaliana GN PUB26 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LT79|PUB25_ARATH 20 400 + 381 Gaps:26 89.07 421 37.07 7e-54 U-box domain-containing protein 25 OS Arabidopsis thaliana GN PUB25 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SVC6|PUB22_ARATH 20 412 + 393 Gaps:46 94.94 435 32.93 7e-54 E3 ubiquitin-protein ligase PUB22 OS Arabidopsis thaliana GN PUB22 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SF15|PUB24_ARATH 22 411 + 390 Gaps:54 92.11 456 33.10 3e-42 E3 ubiquitin-protein ligase PUB24 OS Arabidopsis thaliana GN PUB24 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LXE3|PUB28_ARATH 25 413 + 389 Gaps:37 92.42 409 30.69 7e-37 U-box domain-containing protein 28 OS Arabidopsis thaliana GN PUB28 PE 1 SV 1
blastp_uniprot_sprot sp|Q9FLF4|PUB27_ARATH 17 413 + 397 Gaps:61 94.76 420 30.90 1e-34 U-box domain-containing protein 27 OS Arabidopsis thaliana GN PUB27 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LSA6|PUB29_ARATH 15 425 + 411 Gaps:41 97.83 415 27.34 5e-33 U-box domain-containing protein 29 OS Arabidopsis thaliana GN PUB29 PE 1 SV 1
rpsblast_cdd gnl|CDD|128780 28 91 + 64 Gaps:1 100.00 63 55.56 1e-18 smart00504 Ubox Modified RING finger domain. Modified RING finger domain without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
rpsblast_cdd gnl|CDD|203049 25 97 + 73 none 100.00 73 46.58 2e-17 pfam04564 U-box U-box domain. This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues.

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 24 98 75 PS51698 "UniPathway:UPA00143" U-box domain profile. IPR003613
Pfam 25 97 73 PF04564 "UniPathway:UPA00143" U-box domain IPR003613
SUPERFAMILY 148 406 259 SSF48371 none none IPR016024
Gene3D 25 96 72 G3DSA:3.30.40.10 none none IPR013083
SMART 28 91 64 SM00504 "UniPathway:UPA00143" Modified RING finger domain IPR003613
PANTHER 19 435 417 PTHR22849 none none none
SUPERFAMILY 18 101 84 SSF57850 none none none
Gene3D 146 392 247 G3DSA:1.25.10.10 none none IPR011989
PANTHER 19 435 417 PTHR22849:SF7 none none none

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 9   Mitochondrion 5 0.043 0.513 NON-PLANT 9